SFF548
Library SF
(Link to library)
Clone ID SFF548
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11615-1
Original site URL
Representative seq. ID SFF548Z
(Link to Original site)
Representative DNA sequence
>SFF548 (SFF548Q) /CSM/SF/SFF5-B/SFF548Q.Seq.d/
XXXXXXXXXXAATCATTATCAATTCAAGATAATCATAGTATCATTATGATGGGTACACCA
GAGTCAAATATTATTGCTGACGTTCCAAAAACAAGTGGTGATACCGATGAGGTGTTCAAT
GATTTCGAATTTGATTATATCCCAGATTCTGATGAAATCTCTCATATTGAAAAAAATAAA
AATCAATTACTTGCAATGATTGAACGTTCAAATGATATCTCTTTAATTAATGACCCAAGA
CCAAATAAAAAATTATTAGTTTTAGATTTAGATCATACAATTTTAGATTTTAAAGATCAA
GATGTTGAAAATATGAAAAGACCACATTTAGAAGAATTTTTAGTACAATCCTATCAACAT
TATGATATTGGAATTTGGTCTCAAACTAGTTGGAAATGGATTGAAATTAAATTAACAGAG
TTGGGATTATTAACTAATCCACGTTTTAAAATTTGTTTTGTAATGGATCAAACATTAATG
TTTAAGGTAACAACCTATAGAACCATCAATGGTAAAGAGAGAACTAAAATTAAACATAAT
GTAAAAGCATTGGAAGTAATTTGGAAACATCAACATTTAGGTAAATTCTTTAGTATGAAA
AATACTTTACATGTTGATGATCTCTCCAAAAACTTTGCAATGAATCCAAAGAATG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---SLSIQDNHSIIMMGTPESNIIADVPKTSGDTDEVFNDFEFDYIPDSDEISHIEKNKN
QLLAMIERSNDISLINDPRPNKKLLVLDLDHTILDFKDQDVENMKRPHLEEFLVQSYQHY
DIGIWSQTSWKWIEIKLTELGLLTNPRFKICFVMDQTLMFKVTTYRTINGKERTKIKHNV
KALEVIWKHQHLGKFFSMKNTLHVDDLSKNFAMNPKN


Translated Amino Acid sequence (All Frames)
Frame A:
---iiinsr*s*yhydgytrvkyyc*rsknkw*yr*gvq*fri*lyprf**nlsy*kk*k
sitcnd*tfk*ylfn**pktk*kiisfrfrsynfrf*rsrc*kyekttfrrifstilstl
*ywnlvsn*lemd*n*inrvgiin*stf*nlfcngsninv*gnnl*nhqw*ren*n*t*c
ksigsnletstfr*il*yekyftc**slqklcneske


Frame B:
---SLSIQDNHSIIMMGTPESNIIADVPKTSGDTDEVFNDFEFDYIPDSDEISHIEKNKN
QLLAMIERSNDISLINDPRPNKKLLVLDLDHTILDFKDQDVENMKRPHLEEFLVQSYQHY
DIGIWSQTSWKWIEIKLTELGLLTNPRFKICFVMDQTLMFKVTTYRTINGKERTKIKHNV
KALEVIWKHQHLGKFFSMKNTLHVDDLSKNFAMNPKN


Frame C:
---hyqfkiiivsl*wvhqsqillltfqkqvvipmrcsmisnliisqilmkslilkkiki
nylq*lnvqmisl*lmtqdqikny*f*i*iiqf*ilkikmlki*kdhi*knf*ynpinim
ilefglklvgnglkln*qswdy*lihvlkfvl*wikh*clr*qpiepsmvkrelklnim*
khwk*fgnini*vnslv*kilymlmispktlq*iqrm


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK715 (SSK715Q) /CSM/SS/SSK7-A/SSK715Q.Seq.d/ 938 0.0
SFH658 (SFH658Q) /CSM/SF/SFH6-C/SFH658Q.Seq.d/ 938 0.0
SFG712 (SFG712Q) /CSM/SF/SFG7-A/SFG712Q.Seq.d/ 938 0.0
SFG351 (SFG351Q) /CSM/SF/SFG3-C/SFG351Q.Seq.d/ 938 0.0
SFF746 (SFF746Q) /CSM/SF/SFF7-B/SFF746Q.Seq.d/ 938 0.0
SFF548 (SFF548Q) /CSM/SF/SFF5-B/SFF548Q.Seq.d/ 938 0.0
SFF186 (SFF186Q) /CSM/SF/SFF1-D/SFF186Q.Seq.d/ 938 0.0
CHE112 (CHE112Q) /CSM/CH/CHE1-A/CHE112Q.Seq.d/ 938 0.0
CHD154 (CHD154Q) /CSM/CH/CHD1-C/CHD154Q.Seq.d/ 938 0.0
CHC367 (CHC367Q) /CSM/CH/CHC3-C/CHC367Q.Seq.d/ 938 0.0

own update 2004. 5.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 684 0.0 16
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 30 2e-04 14
AE014017|AE014017.1 Buchnera aphidicola (Baizongia pistaciae), section 2 of 2 of the complete genome. 34 5e-04 11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 32 0.001 14
AE014016|AE014016.1 Buchnera aphidicola (Baizongia pistaciae), section 1 of 2 of the complete genome. 42 0.004 12
AC022026|AC022026.7 Homo sapiens chromosome 10 clone RP11-506B4, complete sequence. 36 0.005 7
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 32 0.010 13
AE015937|AE015937.1 Clostridium tetani E88, section 2 of 10 of the complete genome. 36 0.012 11
BX572091|BX572091.1 Prochlorococcus marinus MED4 complete genome; segment 2/5. 34 0.012 10
AL161735|AL161735.8 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-347L19. 32 0.016 11
dna update 2003.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_106(AC116984|pid:none) Dictyostelium discoideum chromos... 441 e-122
(Q2KJD7) RecName: Full=Ubiquitin-like domain-containing CTD phos... 149 7e-35
AY893165_1(AY893165|pid:none) Synthetic construct Homo sapiens c... 149 7e-35
(Q8BGR9) RecName: Full=Ubiquitin-like domain-containing CTD phos... 149 9e-35
(Q28EX9) RecName: Full=Ubiquitin-like domain-containing CTD phos... 145 8e-34
AE017344_321(AE017344|pid:none) Cryptococcus neoformans var. neo... 137 2e-31
(Q8W3M6) RecName: Full=Ubiquitin-like domain-containing CTD phos... 130 4e-29
EU961853_1(EU961853|pid:none) Zea mays clone 238650 ubiquitin-li... 126 5e-28
CP001327_139(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 124 2e-27
AE014297_3394(AE014297|pid:none) Drosophila melanogaster chromos... 121 2e-26
protein update 2009. 5.24
PSORT

psg: 0.75 gvh: 0.43 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SFF548 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFF548Z
3' end seq.
>SFF548Z.Seq
----------AATCATTATCAATTCAAGATAATCATAGTATCATTATGATGGGTACACCA
GAGTCAAATATTATTGCTGACGTTCCAAAAACAAGTGGTGATACCGATGAGGTGTTCAAT
GATTTCGAATTTGATTATATCCCAGATTCTGATGAAATCTCTCATATTGAAAAAAATAAA
AATCAATTACTTGCAATGATTGAACGTTCAAATGATATCTCTTTAATTAATGACCCAAGA
CCAAATAAAAAATTATTAGTTTTAGATTTAGATCATACAATTTTAGATTTTAAAGATCAA
GATGTTGAAAATATGAAAAGACCACATTTAGAAGAATTTTTAGTACAATCCTATCAACAT
TATGATATTGGAATTTGGTCTCAAACTAGTTGGAAATGGATTGAAATTAAATTAACAGAG
TTGGGATTATTAACTAATCCACGTTTTAAAATTTGTTTTGTAATGGATCAAACATTAATG
TTTAAGGTAACAACCTATAGAACCATCAATGGTAAAGAGAGAACTAAAATTAAACATAAT
GTAAAAGCATTGGAAGTAATTTGGAAACATCAACATTTAGGTAAATTCTTTAGTATGAAA
AATACTTTACATGTTGATGATCTCTCCAAAAACTTTGCAATGAATCCAAAGAATG
Length of 3' end seq. 645
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -