SFF405
Library SF
(Link to library)
Clone ID SFF405
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13863-1
Original site URL
Representative seq. ID SFF405Z
(Link to Original site)
Representative DNA sequence
>SFF405 (SFF405Q) /CSM/SF/SFF4-A/SFF405Q.Seq.d/
XXXXXXXXXXACGTGGTGTAAATAAATTCTTGTCTCCCATTGGGATGTTTGTTAATGTCA
TTCAAATGTAAACAAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATG
GCAATGGTCGAAGCAATTCACTCTTTCCCAAGTGCATCTGATTTAAATCTTCGTTTGAAG
TGGCCAAACGATATCCTATAGTAATGAACCAGGTATGAAAGTTGGTGGTGTCCTCTGTGA
ATCAAATTATCTTAACAATGAATTTGATGTTGTCATTGGTGTTGGTGTTAATCTTTCAAA
TTCAAATAATCCATCAACAACTATAAATCAATTAATTCAAAAGAAAAAATATGGATTTTC
ATCATCATCATTGGCAACAAGTACTGATATTCCAATTTATATTAGTAGAGAAGAATTGGT
TTCAAAATTCTTTAACAAATTCGAACCAATGTTTATGGAATTTACAAGAGATGGCTTTAA
TGCAGATCTTGAAAATAGATACACTGACTTATGGATGCATACAAATCAAATTGTAAAATT
TAAAGAAAGAGATAACCATCATGTTAAAATCATTGGTATTTCTGATAGTGGTTTCCTTAA
AGCTATTGAATGTGATGCTGATGGTAATACATCTTCTGACTCTGAAACCGTTGAGCTTCA
CCCAGATNGTACTTCATTNATATTCAAAACTAATTTAANCAAAAATCACAACAACCAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---wck*ilvshwdvc*chsnvnklmvinyhsfniwlvwqwskqftlsqvhli*ifv*SG
QTISYSNEPGMKVGGVLCESNYLNNEFDVVIGVGVNLSNSNNPSTTINQLIQKKKYGFSS
SSLATSTDIPIYISREELVSKFFNKFEPMFMEFTRDGFNADLENRYTDLWMHTNQIVKFK
ERDNHHVKIIGISDSGFLKAIECDADGNTSSDSETVELHPDXTSXIFKTNLXKNHNNQ


Translated Amino Acid sequence (All Frames)
Frame A:
---rgvnkflspigmfvnviqm*tn*w**itipsifgwygngrsnslfpkci*fkssfev
akrypivmnqv*klvvssvnqiiltmnlmlslvlvlifqiqiihqql*in*fkrknmdfh
hhhwqqvlifqfilveknwfqnsltnsnqclwnlqemalmqilkidtltygciqikl*nl
kkeitimlkslvflivvslkllnvmlmvihlltlkplsftqxvlhxyskli*xkitttk


Frame B:
---vv*insclplgcllmsfkckqtdgnklpflqylagmamveaihsfpsasdlnlrlkw
pndil***tryeswwcpl*ikls*q*i*cchwcwc*sfkfk*sinnyksinskekiwifi
iiignky*ysnly**rrigfkil*qirtnvygiykrwl*crs*k*ih*lmdayksncki*
rkr*psc*nhwyf**wfp*sy*m*c*w*yif*l*nr*asprxyfixiqn*fxqksqqpk


Frame C:
---wck*ilvshwdvc*chsnvnklmvinyhsfniwlvwqwskqftlsqvhli*ifv*SG
QTISYSNEPGMKVGGVLCESNYLNNEFDVVIGVGVNLSNSNNPSTTINQLIQKKKYGFSS
SSLATSTDIPIYISREELVSKFFNKFEPMFMEFTRDGFNADLENRYTDLWMHTNQIVKFK
ERDNHHVKIIGISDSGFLKAIECDADGNTSSDSETVELHPDXTSXIFKTNLXKNHNNQ


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF405 (SFF405Q) /CSM/SF/SFF4-A/SFF405Q.Seq.d/ 1390 0.0
SFD294 (SFD294Q) /CSM/SF/SFD2-D/SFD294Q.Seq.d/ 1316 0.0
SFJ133 (SFJ133Q) /CSM/SF/SFJ1-B/SFJ133Q.Seq.d/ 1279 0.0
CHB590 (CHB590Q) /CSM/CH/CHB5-D/CHB590Q.Seq.d/ 1233 0.0
AFC713 (AFC713Q) /CSM/AF/AFC7-A/AFC713Q.Seq.d/ 1191 0.0
SFE209 (SFE209Q) /CSM/SF/SFE2-A/SFE209Q.Seq.d/ 1065 0.0
AFN413 (AFN413Q) /CSM/AF/AFN4-A/AFN413Q.Seq.d/ 894 0.0
AFO680 (AFO680Q) /CSM/AF/AFO6-D/AFO680Q.Seq.d/ 878 0.0
AFH686 (AFH686Q) /CSM/AF/AFH6-D/AFH686Q.Seq.d/ 819 0.0
SFI426 (SFI426Q) /CSM/SF/SFI4-B/SFI426Q.Seq.d/ 799 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 5e-07 18
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 1e-06 23
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 9e-06 17
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 34 1e-04 17
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 42 2e-04 9
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 3e-04 16
BX547932|BX547932.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-269E10. 40 0.002 6
BX511250|BX511250.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-57K11. 34 0.004 10
AR271569|AR271569.1 Sequence 1 from patent US 6503729. 32 0.005 25
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 34 0.007 20
dna update 2003.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP008208_425(AP008208|pid:none) Oryza sativa (japonica cultivar-... 89 2e-26
AP005804_18(AP005804|pid:none) Oryza sativa Japonica Group genom... 86 1e-25
AC006053_17(AC006053|pid:none) Arabidopsis thaliana chromosome 2... 87 4e-24
G84651(G84651)biotin holocarboxylase synthetase [imported] - Ara... 85 2e-23
AF414940_1(AF414940|pid:none) Arabidopsis thaliana holocarboxyla... 84 2e-23
CP000582_324(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 85 3e-23
(P50747) RecName: Full=Biotin--protein ligase; EC=6.3.4... 68 4e-22
(Q920N2) RecName: Full=Biotin--protein ligase; EC=6.3.4... 65 1e-20
AK168925_1(AK168925|pid:none) Mus musculus 16 days embryo kidney... 65 1e-20
BC153857_1(BC153857|pid:none) Bos taurus similar to holocarboxyl... 60 9e-20
protein update 2009. 5.24
PSORT

psg: 0.75 gvh: 0.37 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SFF405 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFF405Z
3' end seq.
>SFF405Z.Seq
----------ACGTGGTGTAAATAAATTCTTGTCTCCCATTGGGATGTTTGTTAATGTCA
TTCAAATGTAAACAAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATG
GCAATGGTCGAAGCAATTCACTCTTTCCCAAGTGCATCTGATTTAAATCTTCGTTTGAAG
TGGCCAAACGATATCCTATAGTAATGAACCAGGTATGAAAGTTGGTGGTGTCCTCTGTGA
ATCAAATTATCTTAACAATGAATTTGATGTTGTCATTGGTGTTGGTGTTAATCTTTCAAA
TTCAAATAATCCATCAACAACTATAAATCAATTAATTCAAAAGAAAAAATATGGATTTTC
ATCATCATCATTGGCAACAAGTACTGATATTCCAATTTATATTAGTAGAGAAGAATTGGT
TTCAAAATTCTTTAACAAATTCGAACCAATGTTTATGGAATTTACAAGAGATGGCTTTAA
TGCAGATCTTGAAAATAGATACACTGACTTATGGATGCATACAAATCAAATTGTAAAATT
TAAAGAAAGAGATAACCATCATGTTAAAATCATTGGTATTTCTGATAGTGGTTTCCTTAA
AGCTATTGAATGTGATGCTGATGGTAATACATCTTCTGACTCTGAAACCGTTGAGCTTCA
CCCAGATNGTACTTCATTNATATTCAAAACTAATTTAANCAAAAATCACAACAACCAAAA
Length of 3' end seq. 710
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -