>SFF379 (SFF379Q) /CSM/SF/SFF3-D/SFF379Q.Seq.d/
XXXXXXXXXXAANAGGTGGTANNNAAANTTTTGNNNNAANNTTTANNTGNAANNNCCNTN
ANTNTTGNANTTNAGGGNTNANATNAATATTNAAAATGNTAAANNAAAAGATTNAAGACA
AANAAGGTNTNNCANNANANCAACAAANATTANTTTTNNNTGGTNANCAATTANAANATG
NTNGNNCTCTNTNAGATTATAACATTNAAAAGNAATCCACTNTCCATTTTAGTNNTNAGA
TTAAGAGGTGGTATGCAAATTTTTGTCAAAACCNTCANTGGTAAGACTATTACACTCNAA
GTTGAAGGTTNTGATAACATTNAGAATGTTAAANCCAAAATNCAANACAAANAAGGTATT
CCACCAGATNAACAACGTTTCATTTTNGCCGGTAAACAATTGNAGGATGGTCGTACTCTC
TCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTNTCAGATTAAGAGGTGGT
ATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT
GACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATTCCA

---xvvxkxlxxxlxxxxxxxxxxgxxxyxkx*XKRXKTXKVXXXXNKXXFXXVXNXXMX
XLXXIITXKXNPLSILVXRLRGGMQIFVKTXXGKTITLXVEGXDNIXNVKXKXQXKXGIP
PDXQRFIXAGKQLXDGRTLSDYNIQKESTLHLVXRLRGGMQIFVKTLTGKTITLEVEGSD
NIENVKTKIQDKEGIP

Frame A:
---xggxxxfxxxfxxxxxxxxxxgxxxixkmxxxkixdkxgxxxxqqxlxxxgxqlxxx
xxlxdynixkxstxhfsxxikrwyanfcqnxxw*dyytxs*rx**hxec*xqnxxqxrys
trxttfhfxr*tixgwsysl*lqhskgihspfsxqikrwyanfcknshw*nhytrs*r**
qh*ecknknsrqrrys


Frame B:
---xvvxkxlxxxlxxxxxxxxxxgxxxyxkx*XKRXKTXKVXXXXNKXXFXXVXNXXMX
XLXXIITXKXNPLSILVXRLRGGMQIFVKTXXGKTITLXVEGXDNIXNVKXKXQXKXGIP
PDXQRFIXAGKQLXDGRTLSDYNIQKESTLHLVXRLRGGMQIFVKTLTGKTITLEVEGSD
NIENVKTKIQDKEGIP


Frame C:
---rwxxxfxxxxxxxxpxxlxxrxxxnixnxkxkdxrqxrxxxxxtxixfxwxxixxxx
xsxrl*hxkxihxpf*xxd*evvckflskpsxvrllhsklkvxitxrmlxpkxxtxkvfh
qxnnvsfxpvnnxrmvvlslittfkrnplsi*xsd*evvckfl*klslvkplhsklkvvt
tlrm*kqkfktkkvf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF379 (SFF379Q) /CSM/SF/SFF3-D/SFF379Q.Seq.d/                        724   0.0
CHA336 (CHA336Q) /CSM/CH/CHA3-B/CHA336Q.Seq.d/                        676   0.0
CFB782 (CFB782Q) /CSM/CF/CFB7-D/CFB782Q.Seq.d/                        676   0.0
VFK183 (VFK183Q) /CSM/VF/VFK1-D/VFK183Q.Seq.d/                        668   0.0
SFK754 (SFK754Q) /CSM/SF/SFK7-C/SFK754Q.Seq.d/                        668   0.0
SFI410 (SFI410Q) /CSM/SF/SFI4-A/SFI410Q.Seq.d/                        668   0.0
SFI270 (SFI270Q) /CSM/SF/SFI2-C/SFI270Q.Seq.d/                        668   0.0
SFG820 (SFG820Q) /CSM/SF/SFG8-A/SFG820Q.Seq.d/                        668   0.0
SFD815 (SFD815Q) /CSM/SF/SFD8-A/SFD815Q.Seq.d/                        668   0.0
SFD545 (SFD545Q) /CSM/SF/SFD5-B/SFD545Q.Seq.d/                        668   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   611   e-171  2
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   603   e-168  2
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   603   e-168  2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   349   2e-94  2
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   291   3e-90  2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   276   2e-85  2
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   276   1e-76  3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   295   1e-76  3
BP521434|BP521434.1 Hydra magnipapillata cDNA, clone:hmp_19068.    90   2e-41  4
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read.   119   1e-38  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   204   4e-56
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   204   4e-56
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   204   4e-56
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   202   1e-55
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   202   1e-55
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   195   2e-53
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   195   2e-53
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526...   195   2e-53
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019...   194   5e-53
AM117573_1(AM117573|pid:none) Paralvinella grasslei partial gene...   195   5e-53

 psg: 0.64  gvh: 0.49  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 36.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SFF379 is mit

>SFF379Z.Seq
----------AANAGGTGGTANNNAAANTTTTGNNNNAANNTTTANNTGNAANNNCCNTN
ANTNTTGNANTTNAGGGNTNANATNAATATTNAAAATGNTAAANNAAAAGATTNAAGACA
AANAAGGTNTNNCANNANANCAACAAANATTANTTTTNNNTGGTNANCAATTANAANATG
NTNGNNCTCTNTNAGATTATAACATTNAAAAGNAATCCACTNTCCATTTTAGTNNTNAGA
TTAAGAGGTGGTATGCAAATTTTTGTCAAAACCNTCANTGGTAAGACTATTACACTCNAA
GTTGAAGGTTNTGATAACATTNAGAATGTTAAANCCAAAATNCAANACAAANAAGGTATT
CCACCAGATNAACAACGTTTCATTTTNGCCGGTAAACAATTGNAGGATGGTCGTACTCTC
TCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTNTCAGATTAAGAGGTGGT
ATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT
GACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATTCCA