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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFF332
Library SF
(Link to library)
Clone ID SFF332
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15397-1|Contig-U16260-1
Original site URL
Representative seq. ID SFF332P
(Link to Original site)
Representative DNA sequence 
>SFF332 (SFF332Q) /CSM/SF/SFF3-B/SFF332Q.Seq.d/
ACAAGAAGAACAACAAGATGAAAGCGAACAGCCTAATCAAGGAGTTGAAGATGAGGAAGA
AGAAGAATATGATGAAGAGGAATATGAAGAAGAAGAGGAAGATATAAACTTTTCAAAAGA
AACATTAGAGGCTGCCATGGCAACCAAAGTTTCAATTGAACAATATTATACATCACTTTT
TAAATCATTAAAAGAAAGAGATGATTGACGATGCTTTTTAGAGAAAAAAATGGAAGAATT
AAATTTAAGAGAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGA
GTATATTAAATCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCAT
TGGTAGAGGTGCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATACCAAATTTTT
CGCAATGAAAAAGTTGGATAANTCAAACATGATTGAAAAGCATCAXXXXXXXXXXGTTGG
AACACCAGACTATACTGCACCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGGTGTG
ATTGGTGGAGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTT
CAGAATCAATTAGAGAAACCTATCATAAGATTATGAATTGGAAACAAACATTACCAAAAA
TCATGGAAGAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAAC
GTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTC
ATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTC
CACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGAAGAGGAACAACAAC
CTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCC
CTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAA
ACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
qeeqqdeseqpnqgvedeeeeeydeeeyeeeeedinfsketleaamatkvsieqyytslf
kslkerdd*RCFLEKKMEELNLREEQKSVKRRELDKKETEYIKSRRIRLTGHSFESIRII
GRGAFGEVRLVKMKKNTKFFAMKKLDXSNMIEKH---

---WNTRLYCTRSIDERWLQCRGVIGGVLVLLCLKCWLVIHHFVQNQLEKPIIRL*ignk
hyqkswkkqkqk*t*vqkhkislnvsspiq*lvlvlmvsrrfnlihslkvsiged*gkpd
lqsfhnslhqpilqilitmkrnnnlnqcnqfnqnqeersllsislslvtlivilmp*emp
lvv*tvemplvv*ivekl
Translated Amino Acid sequence (All Frames) 
Frame A:
trrttr*krta*srs*r*grrri**rgi*rrrgryklfkrnirgchgnqsfn*tilyitf
*iikrkr*ltmlfrekngrikfkrrtkiskekrig*krnrvy*ikknqthwslf*inqnh
w*rcfw*gqigkdekeyqifrnekvg*xkhd*kas---

---vgtpdytapevlmkdgysaev*lvecwcyyv*nvgwlstilfrin*rnls*dyelet
nitknhgrsksrsklksrstrsh*tfphrsndsywf*wcrgdsissil*rcrlektkgnq
tsnhsttlftnryfkf*sl*rgttt*tnatssikikkkdhffrypfhwlhls*f*cherc
lw*ckq*rclw*yk**rsf

Frame B:
qeeqqdeseqpnqgvedeeeeeydeeeyeeeeedinfsketleaamatkvsieqyytslf
kslkerdd*RCFLEKKMEELNLREEQKSVKRRELDKKETEYIKSRRIRLTGHSFESIRII
GRGAFGEVRLVKMKKNTKFFAMKKLDXSNMIEKH---

---lehqtilhqky**kmvtvqrcdwwsvgvimfemlvgyppfcsesiretyhkimnwkq
tlpkimeeakaevnlspeaqdlierfltdpmtrigfngveeiqshpffkgvdwrrlretr
ppiipqlssptdtsnfdhyeeeqqpepmqpvqsksrrkitsfdipfigytyrnfdamrda
fgsvnsrdafgsinsrea

Frame C:
kknnkmkanslikelkmrkkknmmkrnmkkkrki*tfqkkh*rlpwqpkfqlnniihhfl
nh*kkemiddaf*rkkwkn*i*eknknq*reenwikkkqsilnqeesdslvtllnqsesl
vevllvrsdw*r*kripnfsq*kswixqt*lksi---

---WNTRLYCTRSIDERWLQCRGVIGGVLVLLCLKCWLVIHHFVQNQLEKPIIRL*ignk
hyqkswkkqkqk*t*vqkhkislnvsspiq*lvlvlmvsrrfnlihslkvsiged*gkpd
lqsfhnslhqpilqilitmkrnnnlnqcnqfnqnqeersllsislslvtlivilmp*emp
lvv*tvemplvv*ivekl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF332 (SFF332Q) /CSM/SF/SFF3-B/SFF332Q.Seq.d/                       1810   0.0
VFO102 (VFO102Q) /CSM/VF/VFO1-A/VFO102Q.Seq.d/                       1150   0.0
CFF849 (CFF849Q) /CSM/CF/CFF8-C/CFF849Q.Seq.d/                       1150   0.0
SSM651 (SSM651Q) /CSM/SS/SSM6-C/SSM651Q.Seq.d/                       1144   0.0
SSI880 (SSI880Q) /CSM/SS/SSI8-D/SSI880Q.Seq.d/                       1142   0.0
CFJ206 (CFJ206Q) /CSM/CF/CFJ2-A/CFJ206Q.Seq.d/                       1142   0.0
CFE380 (CFE380Q) /CSM/CF/CFE3-D/CFE380Q.Seq.d/                       1098   0.0
SHK872 (SHK872Q) /CSM/SH/SHK8-C/SHK872Q.Seq.d/                       1029   0.0
CFA456 (CFA456Q) /CSM/CF/CFA4-C/CFA456Q.Seq.d/                        995   0.0
VFO434 (VFO434Q) /CSM/VF/VFO4-B/VFO434Q.Seq.d/                        940   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX322632|BX322632.5 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-52G20.    74   1e-19  5
BX114811|BX114811.1 RZPD Homo sapiens cDNA clone IMAGp998B123866 = IMAGE:1526699 5' EST.    74   7e-12  2
AR266953|AR266953.1 Sequence 1 from patent US 6495353.             74   1e-11  3
E24614|E24614.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    74   1e-11  2
E24613|E24613.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    74   3e-11  2
AR310712|AR310712.1 Sequence 3 from patent US 6559285.             74   4e-11  2
AR201455|AR201455.1 Sequence 3 from patent US 6359193.             74   4e-11  2
AF164041|AF164041.1 Homo sapiens WARTS protein kinase (WARTS) mRNA, complete cds.    74   4e-11  2
AF104413|AF104413.1 Homo sapiens large tumor suppressor 1 (LATS1) mRNA, complete cds.    74   4e-11  2
BX276089|BX276089.8 Human DNA sequence from clone RP11-69I17 on chromosome 6.    74   6e-10  4
dna update 2003.12.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6CFS5) RecName: Full=Serine/threonine-protein kinase CBK1;    ...   160   5e-41
BC151309_1(BC151309|pid:none) Bos taurus serine/threonine kinase...   146   4e-37
FB811472_1(FB811472|pid:none) Sequence 30745 from Patent WO20080...   143   5e-37
AY335703_1(AY335703|pid:none) Synthetic construct Homo sapiens s...   145   6e-37
AK304755_1(AK304755|pid:none) Homo sapiens cDNA FLJ50384 complet...   145   6e-37
AK304862_1(AK304862|pid:none) Homo sapiens cDNA FLJ51774 complet...   145   6e-37
S42864(S42864)protein kinase (EC 2.7.1.-) - common ice plant (fr...   142   8e-37
AM473649_2(AM473649|pid:none) Vitis vinifera contig VV78X065883....   141   2e-36
AC108873_10(AC108873|pid:none) Oryza sativa (japonica cultivar-g...   140   2e-36
(Q7TSE6) RecName: Full=Serine/threonine-protein kinase 38-like; ...   143   4e-36
protein update 2009. 5.24
PSORT 

 psg: 0.33  gvh: 0.37  alm: 0.20  top: 0.53  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.31  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFF332 is cyt
5' end seq. ID SFF332F
5' end seq. 
>SFF332F.Seq
ACAAGAAGAACAACAAGATGAAAGCGAACAGCCTAATCAAGGAGTTGAAGATGAGGAAGA
AGAAGAATATGATGAAGAGGAATATGAAGAAGAAGAGGAAGATATAAACTTTTCAAAAGA
AACATTAGAGGCTGCCATGGCAACCAAAGTTTCAATTGAACAATATTATACATCACTTTT
TAAATCATTAAAAGAAAGAGATGATTGACGATGCTTTTTAGAGAAAAAAATGGAAGAATT
AAATTTAAGAGAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGA
GTATATTAAATCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCAT
TGGTAGAGGTGCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATACCAAATTTTT
CGCAATGAAAAAGTTGGATAANTCAAACATGATTGAAAAGCATCA----------
Length of 5' end seq. 465
3' end seq. ID SFF332Z
3' end seq. 
>SFF332Z.Seq
----------GTTGGAACACCAGACTATACTGCACCAGAAGTATTGATGAAAGATGGTTA
CAGTGCAGAGGTGTGATTGGTGGAGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTT
ATCCACCATTTTGTTCAGAATCAATTAGAGAAACCTATCATAAGATTATGAATTGGAAAC
AAACATTACCAAAAATCATGGAAGAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCAC
AAGATCTCATTGAACGTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCG
AGGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCA
GACCTCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATG
AAGAGGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCA
CTTCTTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATG
CCTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTT
Length of 3' end seq. 588
Connected seq. ID SFF332P
Connected seq. 
>SFF332P.Seq
ACAAGAAGAACAACAAGATGAAAGCGAACAGCCTAATCAAGGAGTTGAAGATGAGGAAGA
AGAAGAATATGATGAAGAGGAATATGAAGAAGAAGAGGAAGATATAAACTTTTCAAAAGA
AACATTAGAGGCTGCCATGGCAACCAAAGTTTCAATTGAACAATATTATACATCACTTTT
TAAATCATTAAAAGAAAGAGATGATTGACGATGCTTTTTAGAGAAAAAAATGGAAGAATT
AAATTTAAGAGAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGA
GTATATTAAATCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCAT
TGGTAGAGGTGCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATACCAAATTTTT
CGCAATGAAAAAGTTGGATAANTCAAACATGATTGAAAAGCATCA----------GTTGG
AACACCAGACTATACTGCACCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGGTGTG
ATTGGTGGAGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTT
CAGAATCAATTAGAGAAACCTATCATAAGATTATGAATTGGAAACAAACATTACCAAAAA
TCATGGAAGAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAAC
GTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTC
ATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTC
CACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGAAGAGGAACAACAAC
CTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCC
CTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAA
ACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTT
Length of connected seq. 1053
Full length Seq ID -
Full length Seq. -
Length of full length seq. -