AFI245
Library AF
(Link to library)
Clone ID AFI245
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15282-1
Original site URL
Representative seq. ID AFI245P
(Link to Original site)
Representative DNA sequence
>AFI245 (AFI245Q) /CSM/AF/AFI2-B/AFI245Q.Seq.d/
TAAATAAAAATAAAATAAAAAAAATAAAAATAAATAAATAAATAAAAANGACAGAAGCAA
AAGGTGATATTGGTTTAATTGGTTTAGCCGTTATGGGTGAAAATTTAGTATTAAATATGG
AAAGTCNTGGATTCACATGTTCAGTCTATAATAGAACTACATCCAAAGTTGNCNAATTTG
TTCAAGGTAGAGGTAAAGGAAAGAAATTCATNGGTTGTCACTCATTANACCNCTTTAGTT
CAATCATTAAAAACCCCACGTAGAGTTATGTTGATGGTTAAAGXXXXXXXXXXGGTCAAA
AAGGTACTGGTAAATGGACTGCTATCAATGCTTTAGATGTCGGTATCCCATTAACTTTGG
TTGCCGAAAGTGTTTTCGCCAGATGTGTATCTTCTTTCAAAGAGGAAAGAGTTAAAGCTT
CAACCATTCTCGCTGGTCCAAATCCAAACGAAGCCAACAAGAAATTCACAGGTGACAAAG
AACAAGTTATCGAAGCCGTTAGACAAGCTTTATTCGCTTCAAAATTGGTTTCATACGCTC
AAGGTTTCACCATGATGAAAGCTGCCGCCAAAGAATATAAATGGAACCTCAACTATGGTA
ATATCGCCCTCTTATGGAGAGGTGGTTGTATCATTCGTTCAACTTTCCTCGGTGAAATCA
AGGGAGCCTTTGATAAGAATCCACAACTTGACAATCTTTTAACCGATTGTTGGTTCAGAG
ATAAATTAGCTGCCGCTCAAGATGGTTGGAGACAAGTTGCCTCAATTTCAGTACTCCACG
GTACCCCAACTCCAGCNTTCACCTCTGCCCTCTCCTACTATGACAGTTATCGTTGTGCTA
AACTCTCTGCCAATCTCGTTCAAGCTCAAAGAGATTACTTTGGTGCTCATACCTTCCAGT
TACTTGATGATCCAAAAGGTGCTCCAGTTCATGTAAATT
sequence update 2001. 6. 2
Translated Amino Acid sequence
*ikik*kk*k*ink*kxqkqkvilv*lv*plwvki*y*IWKVXDSHVQSIIELHPKLXNL
FKVEVKERNSXVVTHXTXLVQSLKTPRRVMLMVK---

---GQKGTGKWTAINALDVGIPLTLVAESVFARCVSSFKEERVKASTILAGPNPNEANKK
FTGDKEQVIEAVRQALFASKLVSYAQGFTMMKAAAKEYKWNLNYGNIALLWRGGCIIRST
FLGEIKGAFDKNPQLDNLLTDCWFRDKLAAAQDGWRQVASISVLHGTPTPAFTSALSYYD
SYRCAKLSANLVQAQRDYFGAHTFQLLDDPKGAPVHVN


Translated Amino Acid sequence (All Frames)
Frame A:
*ikik*kk*k*ink*kxqkqkvilv*lv*plwvki*y*IWKVXDSHVQSIIELHPKLXNL
FKVEVKERNSXVVTHXTXLVQSLKTPRRVMLMVK---

---GQKGTGKWTAINALDVGIPLTLVAESVFARCVSSFKEERVKASTILAGPNPNEANKK
FTGDKEQVIEAVRQALFASKLVSYAQGFTMMKAAAKEYKWNLNYGNIALLWRGGCIIRST
FLGEIKGAFDKNPQLDNLLTDCWFRDKLAAAQDGWRQVASISVLHGTPTPAFTSALSYYD
SYRCAKLSANLVQAQRDYFGAHTFQLLDDPKGAPVHVN

Frame B:
k*k*nkknknk*inkxdrskr*ywfnwfsryg*kfsikygkswihmfsl**nyiqsxxic
sr*r*rkeihxlslixpl*fnh*kphvelc*wlk---

---vkkvlvngllsml*msvsh*lwlpkvfspdvyllskrkelklqpfslvqiqtkptrn
sqvtknklskpldklyslqnwfhtlkvsp**klppkningtstmvispsygevvvsfvql
ssvksreplirihnltif*pivgsein*lplkmvgdklpqfqystvpqlqxsplpsptmt
vivvlnslpisfklkeitlvlipssylmiqkvlqfm*i

Frame C:
nknkikkikink*ikxteakgdigliglavmgenlvlnmesxgftcsvynrttskvxxfv
qgrgkgkkfxgchslxxfssiiknpt*syvdg*---

---skryw*mdcyqcfrcrypinfgcrkcfrqmciffqrgks*sfnhsrwskskrsqqei
hr*qrtsyrsr*tsfirfkigfirsrfhhdescrqri*mepqlw*yrplmerwlyhsfnf
pr*nqgsl**estt*qsfnrllvqr*iscrsrwletsclnfstprypnssxhlcplll*q
lslc*tlcqsrssskrllwcsylpvt**skrcsssck

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFI245 (AFI245Q) /CSM/AF/AFI2-B/AFI245Q.Seq.d/ 1663 0.0
VFM181 (VFM181Q) /CSM/VF/VFM1-D/VFM181Q.Seq.d/ 1255 0.0
AFM637 (AFM637Q) /CSM/AF/AFM6-B/AFM637Q.Seq.d/ 1255 0.0
AFM124 (AFM124Q) /CSM/AF/AFM1-A/AFM124Q.Seq.d/ 1255 0.0
VSH658 (VSH658Q) /CSM/VS/VSH6-C/VSH658Q.Seq.d/ 1253 0.0
SFI368 (SFI368Q) /CSM/SF/SFI3-C/SFI368Q.Seq.d/ 1243 0.0
AFM678 (AFM678Q) /CSM/AF/AFM6-D/AFM678Q.Seq.d/ 1243 0.0
AFK637 (AFK637Q) /CSM/AF/AFK6-B/AFK637Q.Seq.d/ 1243 0.0
AFJ119 (AFJ119Q) /CSM/AF/AFJ1-A/AFJ119Q.Seq.d/ 1243 0.0
AFI421 (AFI421Q) /CSM/AF/AFI4-A/AFI421Q.Seq.d/ 1243 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF394516|AF394516.1 Dictyostelium discoideum 6-phosphogluconate dehydrogenase (gnd) gene, complete cds. 1267 0.0 2
AB006102|AB006102.1 Candida albicans DNA for 6-phosphogluconate dehydrogenase, complete cds. 68 5e-35 4
AL439779|AL439779.1 T3 end of clone BD0AA007H03 of library BD0AA from strain CBS 94 of Candida tropicalis. 72 2e-24 5
Y17297|Y17297.1 Cunninghamella elegans mRNA for 6-phosphogluconate dehydrogenase. 66 1e-21 3
AY145044|AY145044.1 Kluyveromyces lactis clone P2246 GND1 gene, complete cds. 58 4e-20 4
AY144934|AY144934.1 Saccharomyces castellii clone Contig1702 GND1 gene, complete cds. 52 4e-16 4
Z73041|Z73041.1 S.cerevisiae chromosome VII reading frame ORF YGR256w. 54 2e-13 4
Z46631|Z46631.1 S.cerevisiae gene for 6-phosphogluconate dehydrogenase. 46 6e-12 4
U17155|U17155.1 Saccharomyces cerevisiae 6-phosphogluconate dehydrogenase gene, complete cds. 46 6e-12 4
X99228|X99228.1 S.cerevisiae genomic sequence from chromosome VII. 54 2e-11 4
dna update 2004. 6.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8TA03) RecName: Full=6-phosphogluconate dehydrogenase, decarbo... 438 e-121
CP000934_3030(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 278 1e-73
CP000473_6979(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 271 2e-71
CP000388_2095(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 268 2e-70
BC044196_1(BC044196|pid:none) Danio rerio phosphogluconate hydro... 265 2e-69
BC095571_1(BC095571|pid:none) Danio rerio phosphogluconate hydro... 265 2e-69
BT059099_1(BT059099|pid:none) Salmo salar clone ssal-rgf-525-170... 263 5e-69
NRL(1PGD) phosphogluconate dehydrogenase (decarboxylating) (EC 263 6e-69
(P00349) RecName: Full=6-phosphogluconate dehydrogenase, decarbo... 263 6e-69
NRL(1PGN) 6-phosphogluconate dehydrogenase (6-pgdh) (EC 1.1.1.44... 263 6e-69
protein update 2009. 4.22
PSORT

psg: 0.70 gvh: 0.48 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for AFI245 is cyt

5' end seq. ID AFI245F
5' end seq.
>AFI245F.Seq
TAAATAAAAATAAAATAAAAAAAATAAAAATAAATAAATAAATAAAAANGACAGAAGCAA
AAGGTGATATTGGTTTAATTGGTTTAGCCGTTATGGGTGAAAATTTAGTATTAAATATGG
AAAGTCNTGGATTCACATGTTCAGTCTATAATAGAACTACATCCAAAGTTGNCNAATTTG
TTCAAGGTAGAGGTAAAGGAAAGAAATTCATNGGTTGTCACTCATTANACCNCTTTAGTT
CAATCATTAAAAACCCCACGTAGAGTTATGTTGATGGTTAAAG----------
Length of 5' end seq. 283
3' end seq. ID AFI245Z
3' end seq.
>AFI245Z.Seq
----------GGTCAAAAAGGTACTGGTAAATGGACTGCTATCAATGCTTTAGATGTCGG
TATCCCATTAACTTTGGTTGCCGAAAGTGTTTTCGCCAGATGTGTATCTTCTTTCAAAGA
GGAAAGAGTTAAAGCTTCAACCATTCTCGCTGGTCCAAATCCAAACGAAGCCAACAAGAA
ATTCACAGGTGACAAAGAACAAGTTATCGAAGCCGTTAGACAAGCTTTATTCGCTTCAAA
ATTGGTTTCATACGCTCAAGGTTTCACCATGATGAAAGCTGCCGCCAAAGAATATAAATG
GAACCTCAACTATGGTAATATCGCCCTCTTATGGAGAGGTGGTTGTATCATTCGTTCAAC
TTTCCTCGGTGAAATCAAGGGAGCCTTTGATAAGAATCCACAACTTGACAATCTTTTAAC
CGATTGTTGGTTCAGAGATAAATTAGCTGCCGCTCAAGATGGTTGGAGACAAGTTGCCTC
AATTTCAGTACTCCACGGTACCCCAACTCCAGCNTTCACCTCTGCCCTCTCCTACTATGA
CAGTTATCGTTGTGCTAAACTCTCTGCCAATCTCGTTCAAGCTCAAAGAGATTACTTTGG
TGCTCATACCTTCCAGTTACTTGATGATCCAAAAGGTGCTCCAGTTCATGTAAATT
Length of 3' end seq. 646
Connected seq. ID AFI245P
Connected seq.
>AFI245P.Seq
TAAATAAAAATAAAATAAAAAAAATAAAAATAAATAAATAAATAAAAANGACAGAAGCAA
AAGGTGATATTGGTTTAATTGGTTTAGCCGTTATGGGTGAAAATTTAGTATTAAATATGG
AAAGTCNTGGATTCACATGTTCAGTCTATAATAGAACTACATCCAAAGTTGNCNAATTTG
TTCAAGGTAGAGGTAAAGGAAAGAAATTCATNGGTTGTCACTCATTANACCNCTTTAGTT
CAATCATTAAAAACCCCACGTAGAGTTATGTTGATGGTTAAAG----------GGTCAAA
AAGGTACTGGTAAATGGACTGCTATCAATGCTTTAGATGTCGGTATCCCATTAACTTTGG
TTGCCGAAAGTGTTTTCGCCAGATGTGTATCTTCTTTCAAAGAGGAAAGAGTTAAAGCTT
CAACCATTCTCGCTGGTCCAAATCCAAACGAAGCCAACAAGAAATTCACAGGTGACAAAG
AACAAGTTATCGAAGCCGTTAGACAAGCTTTATTCGCTTCAAAATTGGTTTCATACGCTC
AAGGTTTCACCATGATGAAAGCTGCCGCCAAAGAATATAAATGGAACCTCAACTATGGTA
ATATCGCCCTCTTATGGAGAGGTGGTTGTATCATTCGTTCAACTTTCCTCGGTGAAATCA
AGGGAGCCTTTGATAAGAATCCACAACTTGACAATCTTTTAACCGATTGTTGGTTCAGAG
ATAAATTAGCTGCCGCTCAAGATGGTTGGAGACAAGTTGCCTCAATTTCAGTACTCCACG
GTACCCCAACTCCAGCNTTCACCTCTGCCCTCTCCTACTATGACAGTTATCGTTGTGCTA
AACTCTCTGCCAATCTCGTTCAAGCTCAAAGAGATTACTTTGGTGCTCATACCTTCCAGT
TACTTGATGATCCAAAAGGTGCTCCAGTTCATGTAAATT
Length of connected seq. 929
Full length Seq ID -
Full length Seq. -
Length of full length seq. -