>SFF302 (SFF302Q) /CSM/SF/SFF3-A/SFF302Q.Seq.d/
XXXXXXXXXXAAANNTNNAGATAANNAAGGTTTNCCCNAGANNAACANGTNTCATTTTNG
GNGGGTNANNANTAANAANATGGTNGNATNTNTNNTGATNNCAANATNCAAAAAGNATNN
ACTNNCCANNTGGTCNTNAGANTAANAGGTGGTATNCAAATNTTTGTNNAAACATTAANT
GGTAAGACCATCANTNTTGAANTTGAGGGNNTCANATAATATTGAAAATGTTAAAACAAA
AGATNCAAGNCAAAGAAGGTATCCCNCCAGACCAACAAAGATTAATTTTNGNTGGTAAAC
AATTAGAANATGGTNGTACTCTNTNTGATTACAACATTCAAAAGGAATCCACTCTCCATT
TAGTCNTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCANTGGTAAGACTA
TTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACA
AAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATG
GTCGTACTCTCTCNTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGA
TTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAA
GTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATT
C

---xxxixkvxprxtxxixggxxxxxwxxxx*xqxxkxxxxpxgxxxxrwyxnxcxnixw
*dhxx*x*GXXIILKMLKQKXQXKEGIPPDQQRLIXXGKQLEXGXTLXDYNIQKESTLHL
VXRLRGGMQIFVKTLXGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
RTLS*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrry

Frame A:
---xxxixkvxprxtxxixggxxxxxwxxxx*xqxxkxxxxpxgxxxxrwyxnxcxnixw
*dhxx*x*GXXIILKMLKQKXQXKEGIPPDQQRLIXXGKQLEXGXTLXDYNIQKESTLHL
VXRLRGGMQIFVKTLXGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
RTLS*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrry


Frame B:
---xxr*xrfxxxxxvsfxxgxx*xxgxxxxdxxxqkxxtxxxvxrxxggxqxfvxtlxg
ktixxexegxx*y*kc*nkrxkxkkvsxqtnkd*fxxvnn*xmvvlxxittfkrnplsi*
ssd*evvckflskpsxvrllhxklkvlitlrmlkpksktkkvfhqinnvsfspvnnwrmv
vlsxdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegi


Frame C:
---xxdxxgxpxxnxxhfxxvxxxxmvxxxxxxxxkkxxlxxwsxx*xvvxkxlxkh*xv
rpsxlxlrxsxnienvktkdxxqrrypxrptkinfxw*tirxwxysx*lqhskgihspfs
xqikrwyanfcqnpxw*dyytxs*rf**h*ec*sqnprqrrystrsttshfrr*tiggws
yslxittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkkvf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF302 (SFF302Q) /CSM/SF/SFF3-A/SFF302Q.Seq.d/                       1031   0.0
CFB792 (CFB792Q) /CSM/CF/CFB7-D/CFB792Q.Seq.d/                        979   0.0
SFG812 (SFG812Q) /CSM/SF/SFG8-A/SFG812Q.Seq.d/                        975   0.0
CHA687 (CHA687Q) /CSM/CH/CHA6-D/CHA687Q.Seq.d/                        975   0.0
SFK754 (SFK754Q) /CSM/SF/SFK7-C/SFK754Q.Seq.d/                        973   0.0
CHD793 (CHD793Q) /CSM/CH/CHD7-D/CHD793Q.Seq.d/                        973   0.0
CFK311 (CFK311Q) /CSM/CF/CFK3-A/CFK311Q.Seq.d/                        973   0.0
CFJ754 (CFJ754Q) /CSM/CF/CFJ7-C/CFJ754Q.Seq.d/                        973   0.0
CFJ631 (CFJ631Q) /CSM/CF/CFJ6-B/CFJ631Q.Seq.d/                        973   0.0
CFI756 (CFI756Q) /CSM/CF/CFI7-C/CFI756Q.Seq.d/                        973   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   545   0.0    4
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   545   0.0    4
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   545   0.0    4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   379   e-160  4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   379   e-155  5
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   363   e-149  4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   341   e-117  5
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   341   e-117  5
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   119   3e-72  5
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   119   3e-72  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   182   2e-71
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   182   2e-71
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   182   2e-71
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   182   8e-71
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   182   8e-71
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   176   4e-68
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   176   4e-68
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526...   176   4e-68
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   178   5e-68
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   178   5e-68

 psg: 0.41  gvh: 0.49  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 1.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SFF302 is cyt

>SFF302Z.Seq
----------AAANNTNNAGATAANNAAGGTTTNCCCNAGANNAACANGTNTCATTTTNG
GNGGGTNANNANTAANAANATGGTNGNATNTNTNNTGATNNCAANATNCAAAAAGNATNN
ACTNNCCANNTGGTCNTNAGANTAANAGGTGGTATNCAAATNTTTGTNNAAACATTAANT
GGTAAGACCATCANTNTTGAANTTGAGGGNNTCANATAATATTGAAAATGTTAAAACAAA
AGATNCAAGNCAAAGAAGGTATCCCNCCAGACCAACAAAGATTAATTTTNGNTGGTAAAC
AATTAGAANATGGTNGTACTCTNTNTGATTACAACATTCAAAAGGAATCCACTCTCCATT
TAGTCNTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCANTGGTAAGACTA
TTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACA
AAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATG
GTCGTACTCTCTCNTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGA
TTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAA
GTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATT
C