AFI243
Library AF
(Link to library)
Clone ID AFI243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13900-1
Original site URL
Representative seq. ID AFI243Z
(Link to Original site)
Representative DNA sequence
>AFI243 (AFI243Q) /CSM/AF/AFI2-B/AFI243Q.Seq.d/
XXXXXXXXXXCTTCATTGTATATAAAAAGTACATTATCAACACCTGATAATGATGAAATT
TTAAGATGTATGGCAAATGCATTATTGTATCATATTGAAAGAGGTTCACAATTCCCTCAA
AAAAACTGTTGAAATTTTTAGTGAAGAAAAATATCCAATTACTAAAAATAAAATTGATTT
AAAATCAAATCCAACAGTTGAAACTATTTATAAATTTATTAGAGATATTTTTAAAGCCGA
GAAATTAGATAGTGAATGTGCAATTATGTGTTTAGCTTATATTGAAAGAATAATAACGTA
TACTGGTATTACATTAAGTTCAATTAATTGGAGAAGGATAGTTTTATCAGCATTAATTTT
GGCATCAAAAGTTTGGGAAGATCAAAGTGTTTGGAATGTTGATTTCTTACCAGTATTCGA
TAATTTAACAGCGGCCGATTTAAATTGTCTAGAGAGACAATTCCTTGCAATGTTACAATA
CAACGTTAGTTTGAACGCTTCAATCTATGCAAAATACTATTTCGAGTTGAGAAATTTCTC
AAAGTTAGACTCCAATCAATTCCCTTTGAAACCGTTGGATAAATCTGGTGTTAGAAGATT
GGAAGATCATTCAAAGGCTTCGGAATATAGAGTAAAACCATTTAAAAGAAGTGCTAGTGT
NATCAAATTAATCCACCCGAAATTCA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---hci*kvhyqhlimmkf*DVWQMHYCIILKEVHNSLKKTVEIFSEEKYPITKNKIDLK
SNPTVETIYKFIRDIFKAEKLDSECAIMCLAYIERIITYTGITLSSINWRRIVLSALILA
SKVWEDQSVWNVDFLPVFDNLTAADLNCLERQFLAMLQYNVSLNASIYAKYYFELRNFSK
LDSNQFPLKPLDKSGVRRLEDHSKASEYRVKPFKRSASVIKLIHPKF


Translated Amino Acid sequence (All Frames)
Frame A:
---fivykkyiint****nfkmygkciivsy*krftipskkllkflvkkniqllkikli*
nqiqqlklfinlleiflkprn*ivnvqlcv*lilke**rilvlh*vqligeg*fyqh*fw
hqkfgkikvfgmlisyqysii*qrpi*iv*rdnslqcynttlv*tlqsmqntiss*eisq
s*tpinsl*nrwinlvledwkiiqrlrnie*nhlkevlvxsn*strns


Frame B:
---slyikstlstpdndeilrcmanallyhiergsqfpqknc*nf**rkisny*k*n*fk
iksns*nyl*iy*ryf*sreir**mcnyvfsly*knnnvywyyikfn*lekdsfisinfg
ikslgrskclec*fltsir*fnsgrfklsretipcnvtiqr*ferfnlckilfrvekflk
vrlqsipfetvg*iwc*kigrsfkgfgi*skti*kkc*cxqinppei


Frame C:
---hci*kvhyqhlimmkf*DVWQMHYCIILKEVHNSLKKTVEIFSEEKYPITKNKIDLK
SNPTVETIYKFIRDIFKAEKLDSECAIMCLAYIERIITYTGITLSSINWRRIVLSALILA
SKVWEDQSVWNVDFLPVFDNLTAADLNCLERQFLAMLQYNVSLNASIYAKYYFELRNFSK
LDSNQFPLKPLDKSGVRRLEDHSKASEYRVKPFKRSASVIKLIHPKF


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFI243 (AFI243Q) /CSM/AF/AFI2-B/AFI243Q.Seq.d/ 1292 0.0
AFO739 (AFO739Q) /CSM/AF/AFO7-B/AFO739Q.Seq.d/ 1261 0.0
AFL240 (AFL240Q) /CSM/AF/AFL2-B/AFL240Q.Seq.d/ 1261 0.0
SLA802 (SLA802Q) /CSM/SL/SLA8-A/SLA802Q.Seq.d/ 1247 0.0
AFN885 (AFN885Q) /CSM/AF/AFN8-D/AFN885Q.Seq.d/ 1231 0.0
SSA445 (SSA445Q) /CSM/SS/SSA4-B/SSA445Q.Seq.d/ 1219 0.0
AFD763 (AFD763Q) /CSM/AF/AFD7-C/AFD763Q.Seq.d/ 1193 0.0
AFJ628 (AFJ628Q) /CSM/AF/AFJ6-B/AFJ628Q.Seq.d/ 1084 0.0
AFD261 (AFD261Q) /CSM/AF/AFD2-C/AFD261Q.Seq.d/ 963 0.0
AFD226 (AFD226Q) /CSM/AF/AFD2-B/AFD226Q.Seq.d/ 940 0.0

own update 2001. 6.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence. 985 0.0 5
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 32 4e-05 14
L15313|L15313.1 Caenorhabditis elegans cosmid ZK353, complete sequence. 60 5e-05 1
AX344573|AX344573.1 Sequence 24 from Patent WO0200932. 34 0.006 12
AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence. 34 0.008 9
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.018 23
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence. 38 0.025 12
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 36 0.027 7
CR318606|CR318606.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-207N1. 36 0.027 2
BX537278|BX537278.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-88B11. 36 0.028 2
dna update 2004. 6.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116100_4(AC116100|pid:none) Dictyostelium discoideum chromosom... 341 e-109
BT059267_1(BT059267|pid:none) Salmo salar clone ssal-rgf-537-296... 177 1e-44
(Q8BGU5) RecName: Full=Cyclin-Y; AltName: Full=Cyclin fold prote... 177 2e-44
BC035524_1(BC035524|pid:none) Mus musculus RIKEN cDNA 5730405I09... 177 2e-44
(Q96P45) RecName: Full=Cyclin-Y; AltName: Full=Cyclin fold prote... 176 4e-44
AF465728_1(AF465728|pid:none) Homo sapiens cyclin fold protein 1... 176 4e-44
AF429969_1(AF429969|pid:none) Homo sapiens cyclin-box carrying p... 176 4e-44
BC149897_1(BC149897|pid:none) Bos taurus cyclin Y, mRNA (cDNA cl... 175 6e-44
AK017493_1(AK017493|pid:none) Mus musculus 8 days embryo whole b... 174 1e-43
AK057280_1(AK057280|pid:none) Homo sapiens cDNA FLJ32718 fis, cl... 174 2e-43
protein update 2009. 4.22
PSORT

psg: 0.75 gvh: 0.19 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.11 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for AFI243 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFI243Z
3' end seq.
>AFI243Z.Seq
----------CTTCATTGTATATAAAAAGTACATTATCAACACCTGATAATGATGAAATT
TTAAGATGTATGGCAAATGCATTATTGTATCATATTGAAAGAGGTTCACAATTCCCTCAA
AAAAACTGTTGAAATTTTTAGTGAAGAAAAATATCCAATTACTAAAAATAAAATTGATTT
AAAATCAAATCCAACAGTTGAAACTATTTATAAATTTATTAGAGATATTTTTAAAGCCGA
GAAATTAGATAGTGAATGTGCAATTATGTGTTTAGCTTATATTGAAAGAATAATAACGTA
TACTGGTATTACATTAAGTTCAATTAATTGGAGAAGGATAGTTTTATCAGCATTAATTTT
GGCATCAAAAGTTTGGGAAGATCAAAGTGTTTGGAATGTTGATTTCTTACCAGTATTCGA
TAATTTAACAGCGGCCGATTTAAATTGTCTAGAGAGACAATTCCTTGCAATGTTACAATA
CAACGTTAGTTTGAACGCTTCAATCTATGCAAAATACTATTTCGAGTTGAGAAATTTCTC
AAAGTTAGACTCCAATCAATTCCCTTTGAAACCGTTGGATAAATCTGGTGTTAGAAGATT
GGAAGATCATTCAAAGGCTTCGGAATATAGAGTAAAACCATTTAAAAGAAGTGCTAGTGT
NATCAAATTAATCCACCCGAAATTCA
Length of 3' end seq. 676
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -