SFF250
Library SF
(Link to library)
Clone ID SFF250
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFF250P
(Link to Original site)
Representative DNA sequence
>SFF250 (SFF250Q) /CSM/SF/SFF2-C/SFF250Q.Seq.d/
TTATCTCTCAATTNAAGAAACTGGTAAACCATTTTCAGAGTTTCACAATTTCCATGCCAT
TCAATTGAATGATACTCATCCAACACTTGGTATTCCAGAGCTAATGAGAATTCTCATTGA
TGAAGAGAAAAAGAGTTGGGATGAAGCTTGGGATATTACAACAAAGACCTTCTCATATAC
CAATCATACCGTTCTTCCTGAAGCATTGGAGAAATGGAGCGTTTCAATGGTTGAAAATGT
TTTACCAAGACATATAATGATTATCTATGAAATCAATGAAAGATTCTTAAAACTTGTTGA
CCAAAAATGGCCAGGTGATATGTCAAAGAGAAGAGCTCTATCAATCATTGATGAATCTGA
TGGTAAATTCATTCGTATGGCATTTTTGGCAATCGTTGGCTCTCATACAATTAATGGTGT
TGCTTATCTTCATTCAGAATTGGTAAAACATGATGTATTCCCATTGTTTTATGAAATCTG
GCCAAACAAATTCCAAAATAAAACCAATGGTGTCACTCCAAGACGTTGGATTCAACAATC
AAATCCTCAAXXXXXXXXXXAGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGAC
ACTAGATGGGCTCGTGTTTTAACCGCTATTAAAGAANATACTTTTGGTCCACATGAACAA
TTCCAAGATATTATCAACTCTGTTAGTGGTGGCAAATGATCATTACATTCTTAGTTATGA
TTTTGGTTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAA
ATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAAC
CATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCAGT
TCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAA
TGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTC
TGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAA
ACAAACTACAAAAGGTTTTAATATTGGTGGTCAACCAGGNATCCAACAAATTAATTAAAT
ATAATAATAAAAAAAGAAAAAAANAAAAAAAATAAAAAAAAAANTTTCAAACAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
YLSIXETGKPFSEFHNFHAIQLNDTHPTLGIPELMRILIDEEKKSWDEAWDITTKTFSYT
NHTVLPEALEKWSVSMVENVLPRHIMIIYEINERFLKLVDQKWPGDMSKRRALSIIDESD
GKFIRMAFLAIVGSHTINGVAYLHSELVKHDVFPLFYEIWPNKFQNKTNGVTPRRWIQQS
NPQ---

---VKKIIHDGKFTPDTRWARVLTAIKEXTFGPHEQFQDIINSVSGGK*slhs*l*fwfl
lgyskfn*srfqr*s*mg*kinygfsllw*iqfr*nh*rvcstnlgy*rmeetrssssfk
*rssffissttiwftk*yqcyln*kiitfnfc*tnfcfsiicylww**nqqhfktktnyk
rf*ywwstrxptn*lniiikkekxkknkkkxfkq


Translated Amino Acid sequence (All Frames)
Frame A:
lslnxrnw*tifrvsqfpchsie*yssntwysranensh**rekelg*slgyynkdlliy
qsyrss*sigemerfng*kcftktyndyl*nq*kilktc*pkmar*yvkekssinh**i*
w*ihsygifgnrwlsyn*wcclssfrigkt*cipivl*nlakqipk*nqwchsktldsti
kss---

---skenys*wkihtrh*mgscfnry*rxyfwst*tipryyqlc*wwqmiitflvmilvl
twifkiqlikiskielnglknqlwlqfvvvnsvqieplksmlnkfgvlkngrdqvqfqfq
mkklvly*fhhhlvhqmismlsqlkdyhl*lllnkllllhyllslvvikpttl*nqnklq
kvlilvvnqxsnklikynnkkrkkxkk*kkxfqtk

Frame B:
YLSIXETGKPFSEFHNFHAIQLNDTHPTLGIPELMRILIDEEKKSWDEAWDITTKTFSYT
NHTVLPEALEKWSVSMVENVLPRHIMIIYEINERFLKLVDQKWPGDMSKRRALSIIDESD
GKFIRMAFLAIVGSHTINGVAYLHSELVKHDVFPLFYEIWPNKFQNKTNGVTPRRWIQQS
NPQ---

---VKKIIHDGKFTPDTRWARVLTAIKEXTFGPHEQFQDIINSVSGGK*slhs*l*fwfl
lgyskfn*srfqr*s*mg*kinygfsllw*iqfr*nh*rvcstnlgy*rmeetrssssfk
*rssffissttiwftk*yqcyln*kiitfnfc*tnfcfsiicylww**nqqhfktktnyk
rf*ywwstrxptn*lniiikkekxkknkkkxfkq

Frame C:
isqxkklvnhfqsftismpfn*miliqhlvfqs**efslmkrkrvgmklgilqqrpship
iipfflkhwrngafqwlkmfyqdi**lsmksmkds*nlltkngqvicqreelyqslmnlm
vnsfvwhfwqslaliqlmvllifiqnw*nmmyshcfmksgqtnskikpmvslqdvgfnnq
il---

---*rklfmmenshqtldglvf*pllkxillvhmnnskilstllvvandhyilsydfgsy
ldiqnsidqdfkdrakwakksimasvccgkfssdrtikeyaqqiwgieewkrpgpvpvsn
eearsllvpppsgspndinaisierlspltfvkqtsasplsvisggdktnntlkpkqttk
gfniggqpgiqqin*i***kkkkxkkikkkxsnk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF250 (SFF250Q) /CSM/SF/SFF2-C/SFF250Q.Seq.d/ 2198 0.0
AHP867 (AHP867Q) /CSM/AH/AHP8-C/AHP867Q.Seq.d/ 1124 0.0
SHL184 (SHL184Q) /CSM/SH/SHL1-D/SHL184Q.Seq.d/ 1110 0.0
SHK234 (SHK234Q) /CSM/SH/SHK2-B/SHK234Q.Seq.d/ 1110 0.0
SHG849 (SHG849Q) /CSM/SH/SHG8-C/SHG849Q.Seq.d/ 1110 0.0
CHJ670 (CHJ670Q) /CSM/CH/CHJ6-C/CHJ670Q.Seq.d/ 1110 0.0
AHM406 (AHM406Q) /CSM/AH/AHM4-A/AHM406Q.Seq.d/ 1110 0.0
AHB359 (AHB359Q) /CSM/AH/AHB3-C/AHB359Q.Seq.d/ 1110 0.0
SSA564 (SSA564Q) /CSM/SS/SSA5-C/SSA564Q.Seq.d/ 1104 0.0
SHA282 (SHA282Q) /CSM/SH/SHA2-D/SHA282Q.Seq.d/ 1100 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds. 890 0.0 3
X62142|X62142.1 D. discoideum glpV gene for glycogen phosphorylase 1. 92 1e-36 6
AY098895|AY098895.1 Citrus hybrid cultivar starch phosphorylase type H mRNA, complete cds. 54 9e-18 4
BQ866582|BQ866582.1 QGC8G01.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC8G01, mRNA sequence. 62 2e-16 3
AK103367|AK103367.1 Oryza sativa (japonica cultivar-group) cDNA clone:J033126P09, full insert sequence. 42 1e-11 3
AK105410|AK105410.1 Oryza sativa (japonica cultivar-group) cDNA clone:001-123-F09, full insert sequence. 42 1e-11 3
AF326977|AF326977.1 Oryza sativa alpha 1,4-glucan phosphorylase H isozyme mRNA, partial cds. 42 1e-11 3
AX755450|AX755450.1 Sequence 151 from Patent WO03000905. 42 1e-11 3
AX755779|AX755779.1 Sequence 519 from Patent WO03000905. 42 1e-11 3
CB640810|CB640810.1 ---. 42 1e-11 3
dna update 2003.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X62142_1(X62142|pid:none) D. discoideum glpV gene for glycogen p... 252 2e-65
(Q00766) RecName: Full=Glycogen phosphorylase 1; Short=... 252 2e-65
CP001577_330(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 237 7e-61
AE016796_1164(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos... 233 1e-59
AY530017_1(AY530017|pid:none) Vibrio vulnificus malPQ operon, co... 232 2e-59
BA000038_77(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chro... 232 2e-59
CP001032_4025(CP001032|pid:none) Opitutus terrae PB90-1, complet... 229 1e-58
A82511(A82511) glycogen phosphorylase (EC 2.4.1.1) [similarity] ... 228 4e-58
CP000626_119(CP000626|pid:none) Vibrio cholerae O395 chromosome ... 228 4e-58
AY496065_1(AY496065|pid:none) Crassostrea gigas glycogen phospho... 226 1e-57
protein update 2009. 5.24
PSORT

psg: 0.71 gvh: 0.40 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SFF250 is cyt

5' end seq. ID SFF250F
5' end seq.
>SFF250F.Seq
TTATCTCTCAATTNAAGAAACTGGTAAACCATTTTCAGAGTTTCACAATTTCCATGCCAT
TCAATTGAATGATACTCATCCAACACTTGGTATTCCAGAGCTAATGAGAATTCTCATTGA
TGAAGAGAAAAAGAGTTGGGATGAAGCTTGGGATATTACAACAAAGACCTTCTCATATAC
CAATCATACCGTTCTTCCTGAAGCATTGGAGAAATGGAGCGTTTCAATGGTTGAAAATGT
TTTACCAAGACATATAATGATTATCTATGAAATCAATGAAAGATTCTTAAAACTTGTTGA
CCAAAAATGGCCAGGTGATATGTCAAAGAGAAGAGCTCTATCAATCATTGATGAATCTGA
TGGTAAATTCATTCGTATGGCATTTTTGGCAATCGTTGGCTCTCATACAATTAATGGTGT
TGCTTATCTTCATTCAGAATTGGTAAAACATGATGTATTCCCATTGTTTTATGAAATCTG
GCCAAACAAATTCCAAAATAAAACCAATGGTGTCACTCCAAGACGTTGGATTCAACAATC
AAATCCTCAA----------
Length of 5' end seq. 550
3' end seq. ID SFF250Z
3' end seq.
>SFF250Z.Seq
----------AGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGACACTAGATGGG
CTCGTGTTTTAACCGCTATTAAAGAANATACTTTTGGTCCACATGAACAATTCCAAGATA
TTATCAACTCTGTTAGTGGTGGCAAATGATCATTACATTCTTAGTTATGATTTTGGTTCT
TACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAA
AAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAG
TATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGTTTCA
AATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAATGATATCAAT
GCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCTCCA
TTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAACTACA
AAAGGTTTTAATATTGGTGGTCAACCAGGNATCCAACAAATTAATTAAATATAATAATAA
AAAAAGAAAAAAANAAAAAAAATAAAAAAAAAANTTTCAAACAAAA
Length of 3' end seq. 636
Connected seq. ID SFF250P
Connected seq.
>SFF250P.Seq
TTATCTCTCAATTNAAGAAACTGGTAAACCATTTTCAGAGTTTCACAATTTCCATGCCAT
TCAATTGAATGATACTCATCCAACACTTGGTATTCCAGAGCTAATGAGAATTCTCATTGA
TGAAGAGAAAAAGAGTTGGGATGAAGCTTGGGATATTACAACAAAGACCTTCTCATATAC
CAATCATACCGTTCTTCCTGAAGCATTGGAGAAATGGAGCGTTTCAATGGTTGAAAATGT
TTTACCAAGACATATAATGATTATCTATGAAATCAATGAAAGATTCTTAAAACTTGTTGA
CCAAAAATGGCCAGGTGATATGTCAAAGAGAAGAGCTCTATCAATCATTGATGAATCTGA
TGGTAAATTCATTCGTATGGCATTTTTGGCAATCGTTGGCTCTCATACAATTAATGGTGT
TGCTTATCTTCATTCAGAATTGGTAAAACATGATGTATTCCCATTGTTTTATGAAATCTG
GCCAAACAAATTCCAAAATAAAACCAATGGTGTCACTCCAAGACGTTGGATTCAACAATC
AAATCCTCAA----------AGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGAC
ACTAGATGGGCTCGTGTTTTAACCGCTATTAAAGAANATACTTTTGGTCCACATGAACAA
TTCCAAGATATTATCAACTCTGTTAGTGGTGGCAAATGATCATTACATTCTTAGTTATGA
TTTTGGTTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAA
ATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAAC
CATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCAGT
TCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAA
TGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTC
TGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAA
ACAAACTACAAAAGGTTTTAATATTGGTGGTCAACCAGGNATCCAACAAATTAATTAAAT
ATAATAATAAAAAAAGAAAAAAANAAAAAAAATAAAAAAAAAANTTTCAAACAAAA
Length of connected seq. 1186
Full length Seq ID -
Full length Seq. -
Length of full length seq. -