SFF248
Library SF
(Link to library)
Clone ID SFF248
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFF248P
(Link to Original site)
Representative DNA sequence
>SFF248 (SFF248Q) /CSM/SF/SFF2-B/SFF248Q.Seq.d/
ACCTATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTTTATTTTTTTA
AACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTTTTNCATATTA
ATTAATTATGCAAATTTTTGTTAAAACTNTCACTGGTAAAACCATCACATTGGAAGTTGA
AGGTNGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTNTTCCNCC
AGATCAACAAAGATTAATNTTTGCTGGTAAACAATTANAANANGGTCGTNCTNTTTNTGA
TTNCAACATTCAAAAGGAATCCACTCTCCATTTAGTTNTTANATTAANAGGGGGTATGCA
AATNTTTGTAAAAACTNTCACTGGTAAAACCATCNCCTTANAGGTTGAAGGTNGGGATAA
CATTGAAAANGTTAAAGCTAAAATTCAAGACAAANAAGGTNTCCCACCAGATCAACAAAG
ATTAATTTTCGCTGGTAAACAATTANAANANGGTNGTACTNTNTNTGACTNCAACATTCA
AAAGGAATCCACTCTCCACTTGGTTNTCANATTAANAGGGGGTATGCAANTNTTTGTAAA
AACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACACCATTGAAAATGT
TAAAGCCAAAATCCAAGACAAAGAAGGGTTNCCNCCAGATCAACAAAGATTAATTTTCGC
TGGTAXXXXXXXXXXCAAAAAGAACCCCCTCCCCTTTTAGTTTAAAAATAAAGAGGNGGT
ATGCAAATTTTTGTTAAACCTCTCNCTGGTAAACCCNTCCCCTTGGAAGTGGAAGGTAGT
TATAACATTGAAAATNTCAAAGCCAAAATCCAAGNCAAANNAGGTNTTCCCCCAGATCAA
CAACGTTTCATTTTCGGTGGTAAACAATTAAAAAATGGCCGTACTNTNTNTGATTACAAC
ATCCAAAAANAATCCCCTNNCCNTTTAGTTNTCANATTAAAAGGTGGNANGCAAATNTTT
GTAAAAACCTTGNCTGGTAANACCNTCCCNTTGGAAGTNGAAGGTTTTNANAACNTTGAA
AATGTCAAAGCCAAAATTCAANNCAAANAAGGTTTTCCCCCAGATCAACAAANATTNATT
TTNGNTGGNAAACAATTAAAANATGGTNGGACTNTNTNTGNCTNCAANATTCAAAAGGAA
TCCCCTNTCCNTTTAGTTNTCANANTAAAAGGNGGNATGCAAATNTTTGTTAAAACNTTN
ACAGGTAAAACNATCCCCNTGGAAGTCGAAGGNAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
pifl*iviinnnflnslff*tyknfffplyiiffsifxy*LIMQIFVKTXTGKTITLEVE
GXDNIENVKAKIQDKEGXPPDQQRLXFAGKQLXXGRXXXDXNIQKESTLHLVXXLXGGMQ
XFVKTXTGKTIXLXVEGXDNIEXVKAKIQDKXGXPPDQQRLIFAGKQLXXGXTXXDXNIQ
KESTLHLVXXLXGGMQXFVKTLTGKTITLEVEGSDTIENVKAKIQDKEGXPPDQQRLIFA
G---

---KRTPSPFSLKIKRXYANFC*tsxw*txplgsgr*l*h*kxqsqnpxqxrxsprsttf
hfrw*tikkwpyxx*lqhpkxipxpfsxxikrwxanxcknlxw*xxpxgsxrfxxx*kcq
sqnsxqxrfsprstxixfxwxtikxwxdxxxlqxskgipxpfsxxxkrxxanxc*nxxr*
nxpxgsrrx


Translated Amino Acid sequence (All Frames)
Frame A:
tyffvnsnn***ffkffiflni*kfffsfvyyfffhfxilinyanfc*nxhw*nhhigs*
rxxqh*kcqg*nsrqrrxsxrstkinxcw*tixxxsxxx*xqhskgihspfsxxixrgya
nxcknxhw*nhxlxg*rxg*h*kx*s*nsrqxrxptrstkinfrw*tixxxxyxx*lqhs
kgihsplgxxixrgyaxxcknldw*nyhlgsrrf*hh*kc*sqnprqrrvxxrstkinfr
w---

---qkepppllv*k*rggmqifvkplxgkpxplevegsynienxkakiqxkxgxppdqqr
fifggkqlkngrtxxdyniqkxspxxlvxxlkggxqxfvktlxgxtxplevegfxnxenv
kakiqxkxgfppdqqxxixxgkqlkxgxtxxxxxiqkespxxlvxxxkggmqxfvktxtg
ktipxevegs

Frame B:
pifl*iviinnnflnslff*tyknfffplyiiffsifxy*LIMQIFVKTXTGKTITLEVE
GXDNIENVKAKIQDKEGXPPDQQRLXFAGKQLXXGRXXXDXNIQKESTLHLVXXLXGGMQ
XFVKTXTGKTIXLXVEGXDNIEXVKAKIQDKXGXPPDQQRLIFAGKQLXXGXTXXDXNIQ
KESTLHLVXXLXGGMQXFVKTLTGKTITLEVEGSDTIENVKAKIQDKEGXPPDQQRLIFA
G---

---kknplpf*fknkexvckfllnlslvnpspwkwkvvitlkxskpkskxxxvfpqinnv
sfsvvnn*kmavlxxittskxnplxx*xsx*kvxxkxl*kpxlvxpsxwkxkvxxtlkms
kpkfxxxkvfpqinkxxfxxxnn*xmvglxxxxxfkrnplsx*xsx*kxxckxllkxxqv
kxspwkskx

Frame C:
lffck***liiif*ilyffkhikiffflcilfffpfxhin*lckfllklslvkpshwklk
vxttlkmsrlkfktkkvfxqinkd*xllvnnxxxvvlfxixtfkrnplsi*xlx*xgvck
xl*klslvkpspxrlkvgitlkxlklkfktxkvshqinkd*fslvnnxxxvvlxxtxtfk
rnplstwxsx*xgvcxxl*kp*lvklspwkskvltplkmlkpksktkkgxxqinkd*fsl
v---

---KRTPSPFSLKIKRXYANFC*tsxw*txplgsgr*l*h*kxqsqnpxqxrxsprsttf
hfrw*tikkwpyxx*lqhpkxipxpfsxxikrwxanxcknlxw*xxpxgsxrfxxx*kcq
sqnsxqxrfsprstxixfxwxtikxwxdxxxlqxskgipxpfsxxxkrxxanxc*nxxr*
nxpxgsrrx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF248 (SFF248Q) /CSM/SF/SFF2-B/SFF248Q.Seq.d/ 1727 0.0
CFG131 (CFG131Q) /CSM/CF/CFG1-B/CFG131Q.Seq.d/ 950 0.0
AFI785 (AFI785Q) /CSM/AF/AFI7-D/AFI785Q.Seq.d/ 948 0.0
AFI866 (AFI866Q) /CSM/AF/AFI8-C/AFI866Q.Seq.d/ 946 0.0
VFF893 (VFF893Q) /CSM/VF/VFF8-D/VFF893Q.Seq.d/ 940 0.0
SFI593 (SFI593Q) /CSM/SF/SFI5-D/SFI593Q.Seq.d/ 940 0.0
CFD132 (CFD132Q) /CSM/CF/CFD1-B/CFD132Q.Seq.d/ 936 0.0
SFG626 (SFG626Q) /CSM/SF/SFG6-B/SFG626Q.Seq.d/ 928 0.0
VFH324 (VFH324Q) /CSM/VF/VFH3-A/VFH324Q.Seq.d/ 926 0.0
CFG517 (CFG517Q) /CSM/CF/CFG5-A/CFG517Q.Seq.d/ 926 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 946 0.0 4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 482 e-169 5
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 272 e-150 7
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 272 e-148 7
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 272 e-146 7
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 488 e-135 5
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 466 e-127 4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 466 e-127 4
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin. 208 4e-97 7
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence. 121 2e-92 6
dna update 2003.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 306 e-137
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 306 e-137
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 306 e-137
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu... 303 e-135
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub... 303 e-135
D17296_1(D17296|pid:none) Rattus norvegicus mRNA for polyubiquit... 303 e-135
AE014296_755(AE014296|pid:none) Drosophila melanogaster chromoso... 303 e-135
BC093445_1(BC093445|pid:none) Homo sapiens ubiquitin C, mRNA (cD... 303 e-135
BC080583_1(BC080583|pid:none) Homo sapiens cDNA clone IMAGE:2822... 303 e-135
AF506022_1(AF506022|pid:none) Tribolium castaneum isolate pCPUb ... 303 e-135
protein update 2009. 5.24
PSORT

psg: 0.76 gvh: 0.38 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for SFF248 is nuc

5' end seq. ID SFF248F
5' end seq.
>SFF248F.Seq
ACCTATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTTTATTTTTTTA
AACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTTTTNCATATTA
ATTAATTATGCAAATTTTTGTTAAAACTNTCACTGGTAAAACCATCACATTGGAAGTTGA
AGGTNGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTNTTCCNCC
AGATCAACAAAGATTAATNTTTGCTGGTAAACAATTANAANANGGTCGTNCTNTTTNTGA
TTNCAACATTCAAAAGGAATCCACTCTCCATTTAGTTNTTANATTAANAGGGGGTATGCA
AATNTTTGTAAAAACTNTCACTGGTAAAACCATCNCCTTANAGGTTGAAGGTNGGGATAA
CATTGAAAANGTTAAAGCTAAAATTCAAGACAAANAAGGTNTCCCACCAGATCAACAAAG
ATTAATTTTCGCTGGTAAACAATTANAANANGGTNGTACTNTNTNTGACTNCAACATTCA
AAAGGAATCCACTCTCCACTTGGTTNTCANATTAANAGGGGGTATGCAANTNTTTGTAAA
AACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACACCATTGAAAATGT
TAAAGCCAAAATCCAAGACAAAGAAGGGTTNCCNCCAGATCAACAAAGATTAATTTTCGC
TGGTA----------
Length of 5' end seq. 725
3' end seq. ID SFF248Z
3' end seq.
>SFF248Z.Seq
----------CAAAAAGAACCCCCTCCCCTTTTAGTTTAAAAATAAAGAGGNGGTATGCA
AATTTTTGTTAAACCTCTCNCTGGTAAACCCNTCCCCTTGGAAGTGGAAGGTAGTTATAA
CATTGAAAATNTCAAAGCCAAAATCCAAGNCAAANNAGGTNTTCCCCCAGATCAACAACG
TTTCATTTTCGGTGGTAAACAATTAAAAAATGGCCGTACTNTNTNTGATTACAACATCCA
AAAANAATCCCCTNNCCNTTTAGTTNTCANATTAAAAGGTGGNANGCAAATNTTTGTAAA
AACCTTGNCTGGTAANACCNTCCCNTTGGAAGTNGAAGGTTTTNANAACNTTGAAAATGT
CAAAGCCAAAATTCAANNCAAANAAGGTTTTCCCCCAGATCAACAAANATTNATTTTNGN
TGGNAAACAATTAAAANATGGTNGGACTNTNTNTGNCTNCAANATTCAAAAGGAATCCCC
TNTCCNTTTAGTTNTCANANTAAAAGGNGGNATGCAAATNTTTGTTAAAACNTTNACAGG
TAAAACNATCCCCNTGGAAGTCGAAGGNAGT
Length of 3' end seq. 561
Connected seq. ID SFF248P
Connected seq.
>SFF248P.Seq
ACCTATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTTTATTTTTTTA
AACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTTTTNCATATTA
ATTAATTATGCAAATTTTTGTTAAAACTNTCACTGGTAAAACCATCACATTGGAAGTTGA
AGGTNGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTNTTCCNCC
AGATCAACAAAGATTAATNTTTGCTGGTAAACAATTANAANANGGTCGTNCTNTTTNTGA
TTNCAACATTCAAAAGGAATCCACTCTCCATTTAGTTNTTANATTAANAGGGGGTATGCA
AATNTTTGTAAAAACTNTCACTGGTAAAACCATCNCCTTANAGGTTGAAGGTNGGGATAA
CATTGAAAANGTTAAAGCTAAAATTCAAGACAAANAAGGTNTCCCACCAGATCAACAAAG
ATTAATTTTCGCTGGTAAACAATTANAANANGGTNGTACTNTNTNTGACTNCAACATTCA
AAAGGAATCCACTCTCCACTTGGTTNTCANATTAANAGGGGGTATGCAANTNTTTGTAAA
AACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACACCATTGAAAATGT
TAAAGCCAAAATCCAAGACAAAGAAGGGTTNCCNCCAGATCAACAAAGATTAATTTTCGC
TGGTA----------CAAAAAGAACCCCCTCCCCTTTTAGTTTAAAAATAAAGAGGNGGT
ATGCAAATTTTTGTTAAACCTCTCNCTGGTAAACCCNTCCCCTTGGAAGTGGAAGGTAGT
TATAACATTGAAAATNTCAAAGCCAAAATCCAAGNCAAANNAGGTNTTCCCCCAGATCAA
CAACGTTTCATTTTCGGTGGTAAACAATTAAAAAATGGCCGTACTNTNTNTGATTACAAC
ATCCAAAAANAATCCCCTNNCCNTTTAGTTNTCANATTAAAAGGTGGNANGCAAATNTTT
GTAAAAACCTTGNCTGGTAANACCNTCCCNTTGGAAGTNGAAGGTTTTNANAACNTTGAA
AATGTCAAAGCCAAAATTCAANNCAAANAAGGTTTTCCCCCAGATCAACAAANATTNATT
TTNGNTGGNAAACAATTAAAANATGGTNGGACTNTNTNTGNCTNCAANATTCAAAAGGAA
TCCCCTNTCCNTTTAGTTNTCANANTAAAAGGNGGNATGCAAATNTTTGTTAAAACNTTN
ACAGGTAAAACNATCCCCNTGGAAGTCGAAGGNAGT
Length of connected seq. 1286
Full length Seq ID -
Full length Seq. -
Length of full length seq. -