SFF245
Library SF
(Link to library)
Clone ID SFF245
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID SFF245Z
(Link to Original site)
Representative DNA sequence
>SFF245 (SFF245Q) /CSM/SF/SFF2-B/SFF245Q.Seq.d/
XXXXXXXXXXGTTTCCATTCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAA
TCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCG
TATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTC
ACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCT
CTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGT
CAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGC
TGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGNGGTCCAGA
GCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACC
ATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGA
AGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAA
AGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCNACAAAGATTTAGGTGCTCGT
TTATGTAAGGGTCTGGTATNATGTTAANATGTCATCAAATTCGCTGCAGATCAAACT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---SIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSP
SHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAV
NGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSED
AKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKATKI*vlvyvrvwyxvxmssnslqik


Translated Amino Acid sequence (All Frames)
Frame A:
---fpfn*wnlkmp*sivsihsm*qrfghtktih*fklvvwf*iviqritllklnklpsh
hptwfqvlnhhqircykvvssliqiliviv*v*tinksqsivhsp*rvvlkttnvmvswl
smvmvvkvqtinqtlsxvqshiqnllninltslvsllvnhtiiqmttlfnqviyidsclk
mpnlvssli*svtcpvspskkfkfvpfqtftrxqrfrcsfm*gsgxmlxchqircrsn


Frame B:
---fhsidgi*rclkvsfqsircnkdlvtqrlsinsnwsygfes*srellc*s*tscllt
iphgsry*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgwc*klpt*wfhgc
qw*ww*rsklstklfrxsratsricst*i*rlwfrcsstiqssk*rlcstr*fi*thv*r
cqisfrl*fsrshvrchhqrnssscrfkllqgxkdlgarlckglvxc*xvikfaadqt


Frame C:
---SIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSP
SHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAV
NGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSED
AKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKATKI*vlvyvrvwyxvxmssnslqik


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF245 (SFF245Q) /CSM/SF/SFF2-B/SFF245Q.Seq.d/ 1378 0.0
SFL238 (SFL238Q) /CSM/SF/SFL2-B/SFL238Q.Seq.d/ 1348 0.0
AFD822 (AFD822Q) /CSM/AF/AFD8-A/AFD822Q.Seq.d/ 1340 0.0
AFD795 (AFD795Q) /CSM/AF/AFD7-D/AFD795Q.Seq.d/ 1334 0.0
AFK218 (AFK218Q) /CSM/AF/AFK2-A/AFK218Q.Seq.d/ 1326 0.0
CFI634 (CFI634Q) /CSM/CF/CFI6-B/CFI634Q.Seq.d/ 1322 0.0
CFI568 (CFI568Q) /CSM/CF/CFI5-C/CFI568Q.Seq.d/ 1322 0.0
AFE574 (AFE574Q) /CSM/AF/AFE5-D/AFE574Q.Seq.d/ 1322 0.0
CFA669 (CFA669Q) /CSM/CF/CFA6-C/CFA669Q.Seq.d/ 1318 0.0
AFO835 (AFO835Q) /CSM/AF/AFO8-B/AFO835Q.Seq.d/ 1318 0.0

own update 2001.11.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1241 0.0 3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1241 0.0 3
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 9e-17 2
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 9e-17 2
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 82 9e-17 2
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 86 8e-13 1
CC133697|CC133697.1 NDL.83G19.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.83G19, DNA sequence. 46 5e-12 5
BX564920|BX564920.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse74e09_q1c. 74 3e-09 1
BX554380|BX554380.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse15b01_q1c. 74 3e-09 1
BX554266|BX554266.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse14d06_q1c. 74 3e-09 1
dna update 2003.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 444 e-126
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 259 4e-68
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 259 4e-68
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 256 4e-67
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 249 8e-65
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 247 2e-64
(Q9PWF7) RecName: Full=Catalase; EC=1.11.1.6; &AB03187... 247 3e-64
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili... 246 4e-64
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 246 5e-64
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 242 7e-63
protein update 2009. 5.24
PSORT

psg: 0.75 gvh: 0.22 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: mitochondrial

>> prediction for SFF245 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFF245Z
3' end seq.
>SFF245Z.Seq
----------GTTTCCATTCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAA
TCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCG
TATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTC
ACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCT
CTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGT
CAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGC
TGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGNGGTCCAGA
GCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACC
ATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGA
AGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAA
AGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCNACAAAGATTTAGGTGCTCGT
TTATGTAAGGGTCTGGTATNATGTTAANATGTCATCAAATTCGCTGCAGATCAAACT
Length of 3' end seq. 707
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -