SFF242 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFF242
Library	SF (Link to library)
Clone ID	SFF242 (Link to dictyBase)
Atlas ID	-
NBRP ID	G21979
dictyBase ID	DDB0217530
Link to Contig	Contig-U09043-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFF2-B/SFF242Q.Seq.d/
Representative seq. ID	SFF242P (Link to Original site)
Representative DNA sequence	>SFF242 (SFF242Q) /CSM/SF/SFF2-B/SFF242Q.Seq.d/ AGTTTATTTTTTACATTCAAATCGTACTTTAAATATGGTGCTTATATTTTAGCTGCATCA AGAAGTAATATTCAAGCTGTAAATTTCAATGATAAAAAAGAATTATTAAGTTATTTAGAT GGTGGTGAAATTACAGCATCGATTCAATTTGATTCGTTACCAACATCAACACCAACAATG TTGGGTAGTATTTCAACAGCGGATGATACAATAACAATACCAGAGGGACAATCAATTCAA CAAATGGACCAAGATTCACAAAAACAATCAGATGAAACAACTTCTTCAACTCAATTACCA TTTGGTGGTAGTTTAACTCAAAAAGAACAAGAACAAATCGACCAACAACAACAACAACAA CAATCATCGACACAACAACAACAACAAGATTTAGGATTATCAACACAACAACAACCACAA CAACCACAACAAGAAGATGATAATAATGATCAATATCAAGATATGGCAATACAAGAATTT GATGAATTTAAATCTGATCAAATTAAAATCGATCCATTATTAATACATGATAGAGAATTA ACAGCACAACAACAAAAAGATAAATCTATATTCGCAGAGAAAATAGATACTAAAAAAATT AAAACAGAATCACCACTTCACCGTAGATACXXXXXXXXXXGTTTCAGTTTTACAAAGTTC AGTTTCATTTGCAAATATTTTAACAAATTATAAAAAGTTTAAAATTGAAGATGAAGAAGA AAAGAAAAGAAAAAGATCATCATCATCATCATCATCGTCATCATTATTATCATCACCAAA TGTTAAATCATCACCAAATGGAAGTCCATCAATTATTCCACATTTAAAAAACAGAACTCC AATTATTATTGTACCATCATCATTAACAGCAACAATTTCATTATATAATGTTTTAGAATT TTTACAACATAGTTTGTTTAGACCTACATTAGAAAAGAAACAAGAGATGGCATCACAAAA TATAATCAAACCACCAATGATTACATTTGATAGAATTACAACTCAAAAAGTTACATATGA AGTTATTGATAATATTAAAAGTTTAAAACCTGAAGATTGGTATAGAGTGGTGGCTGCATT TGTTCAAGGTGAAGCTTGGCAATTTAAAGATTGGAAATGGAGTAATCCTGCTGATTTATT TGCAAATATCAGAGGTTTTTATGTTAAATTTGATGATTCAAATCTACCTGATGTCGTCAA ATCTTGGGATGTNAAGTATTACATATAAGTAAATCTAAAAGACATTTAGATCACACAGCA CAAGTTNAATTCTGGAATGCATTTGACGATTTTACAAATGCAAAGAAATCTACCTAATCA TGATCANATTATATTGTAAGAAT
sequence update	2001. 6. 1
Translated Amino Acid sequence	SLFFTFKSYFKYGAYILAASRSNIQAVNFNDKKELLSYLDGGEITASIQFDSLPTSTPTM LGSISTADDTITIPEGQSIQQMDQDSQKQSDETTSSTQLPFGGSLTQKEQEQIDQQQQQQ QSSTQQQQQDLGLSTQQQPQQPQQEDDNNDQYQDMAIQEFDEFKSDQIKIDPLLIHDREL TAQQQKDKSIFAEKIDTKKIKTESPLHRRY--- ---VSVLQSSVSFANILTNYKKFKIEDEEEKKRKRSSSSSSSSSLLSSPNVKSSPNGSPS IIPHLKNRTPIIIVPSSLTATISLYNVLEFLQHSLFRPTLEKKQEMASQNIIKPPMITFD RITTQKVTYEVIDNIKSLKPEDWYRVVAAFVQGEAWQFKDWKWSNPADLFANIRGFYVKF DDSNLPDVVKSWDVKYYIvnlkdiitqhkxnsgmhltilqmqrnlpnhdxiil*e
Translated Amino Acid sequence (All Frames)	Frame A: SLFFTFKSYFKYGAYILAASRSNIQAVNFNDKKELLSYLDGGEITASIQFDSLPTSTPTM LGSISTADDTITIPEGQSIQQMDQDSQKQSDETTSSTQLPFGGSLTQKEQEQIDQQQQQQ QSSTQQQQQDLGLSTQQQPQQPQQEDDNNDQYQDMAIQEFDEFKSDQIKIDPLLIHDREL TAQQQKDKSIFAEKIDTKKIKTESPLHRRY--- ---VSVLQSSVSFANILTNYKKFKIEDEEEKKRKRSSSSSSSSSLLSSPNVKSSPNGSPS IIPHLKNRTPIIIVPSSLTATISLYNVLEFLQHSLFRPTLEKKQEMASQNIIKPPMITFD RITTQKVTYEVIDNIKSLKPEDWYRVVAAFVQGEAWQFKDWKWSNPADLFANIRGFYVKF DDSNLPDVVKSWDVKYYIvnlkdiitqhkxnsgmhltilqmqrnlpnhdxiile Frame B: vyflhsnrtlnmvliflhqevifklismikknyvimvvklqhrfnliryqhqhqqc wvvfqqrmiqqyqrdnqfnkwtkihknnqmkqllqlnyhlvvvlkknknkstnnnnnn nhrhnnnnkidyqhnnnhnnhnkkmiiminikiwqyknlmnlnliklksihyymien qhnnkkinlysqrkilkklkqnhhftvd--- ---fqfykvqfhlqifqiikslklkmkkkrkekdhhhhhhrhhyyhhqmlnhhqmevhq lfhiktelqlllyhhhqqqfhyimfnfynivcldlhkrnkrwhhkisnhqlhli elqlkklhmklliilkvnlkigiewwlhlfkvklgnlkigngvilliylqisevfmlnl miqiylmssnlgmxsitykiktfrshstsxilecirfykckeiylimixlyckn Frame C: fifyiqivliwclyfscikkyssckfq*kriiklfrwwnysidsifvtnintnnv gyfnsgynnntrgtinstngprftktirnnffnsitiwwfnskrtrtnrptttttt iidtttttrfriintttttttttrr*sisrygntriiisnnrsiintrin stttkriyirrenryknnrittspi--- ---fsftkfsfickyfnklkvnrrrkekkkiiiiiiiviiiiitkciitkwksin ystfkkqnsnyyctiiinsnnfiicfrifttfvtyirketrdgitkynqttndyi* nynsksyisyykfktrlvsggcicsrslairlemescfickyqrflci fkstcrqilgcxvlhiskskrhldhtaqvxfwnafddftnakkstssxyivr
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFF242 (SFF242Q) /CSM/SF/SFF2-B/SFF242Q.Seq.d/ 1108 0.0 SSM274 (SSM274Q) /CSM/SS/SSM2-D/SSM274Q.Seq.d/ 44 0.006 AFD564 (AFD564Q) /CSM/AF/AFD5-C/AFD564Q.Seq.d/ 44 0.006 AFC505 (AFC505Q) /CSM/AF/AFC5-A/AFC505Q.Seq.d/ 44 0.006 SHG660 (SHG660Q) /CSM/SH/SHG6-C/SHG660Q.Seq.d/ 40 0.086 SHF534 (SHF534Q) /CSM/SH/SHF5-B/SHF534Q.Seq.d/ 40 0.086 CHI731 (CHI731Q) /CSM/CH/CHI7-B/CHI731Q.Seq.d/ 40 0.086 AHM654 (AHM654Q) /CSM/AH/AHM6-C/AHM654Q.Seq.d/ 40 0.086 AHM579 (AHM579Q) /CSM/AH/AHM5-D/AHM579Q.Seq.d/ 40 0.086 AFM887 (AFM887Q) /CSM/AF/AFM8-D/AFM887Q.Seq.d/ 40 0.086
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 751 0.0 22 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 2e-11 20 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 38 7e-11 21 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 34 8e-11 23 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 2e-10 27 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 42 2e-09 24 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 2e-08 20 AE014839\|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 36 4e-08 16 AC115598\|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 38 3e-07 16 AE014825\|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence. 36 3e-07 16
dna update	2003.12.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q4V8C8) RecName: Full=Parafibromin; AltName: Full=Cell division... 103 5e-23 (Q6P1J9) RecName: Full=Parafibromin; AltName: Full=Cell division... 103 5e-23 CR848125_1(CR848125\|pid:none) Xenopus tropicalis finished cDNA, ... 102 2e-22 BC091086_1(BC091086\|pid:none) Xenopus tropicalis hyperparathyroi... 102 2e-22 BT045487_1(BT045487\|pid:none) Salmo salar clone ssal-rgf-522-337... 101 2e-22 AK026969_1(AK026969\|pid:none) Homo sapiens cDNA: FLJ23316 fis, c... 101 3e-22 BC053163_1(BC053163\|pid:none) Danio rerio Vcell division cycle 7... 102 4e-22 BC043965_1(BC043965\|pid:none) Xenopus laevis hypothetical protei... 99 4e-21 AE014297_888(AE014297\|pid:none) Drosophila melanogaster chromoso... 96 3e-20 AC006634_3(AC006634\|pid:none) Caenorhabditis elegans cosmid F35F... 96 3e-18
protein update	2009. 5.24
PSORT	psg: 0.87 gvh: 0.51 alm: 0.37 top: 0.60 tms: 0.00 mit: 0.34 mip: 0.05 nuc: 0.14 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 32.0 %: mitochondrial 32.0 %: nuclear 24.0 %: cytoplasmic 8.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for SFF242 is mit
5' end seq. ID	SFF242F
5' end seq.	>SFF242F.Seq AGTTTATTTTTTACATTCAAATCGTACTTTAAATATGGTGCTTATATTTTAGCTGCATCA AGAAGTAATATTCAAGCTGTAAATTTCAATGATAAAAAAGAATTATTAAGTTATTTAGAT GGTGGTGAAATTACAGCATCGATTCAATTTGATTCGTTACCAACATCAACACCAACAATG TTGGGTAGTATTTCAACAGCGGATGATACAATAACAATACCAGAGGGACAATCAATTCAA CAAATGGACCAAGATTCACAAAAACAATCAGATGAAACAACTTCTTCAACTCAATTACCA TTTGGTGGTAGTTTAACTCAAAAAGAACAAGAACAAATCGACCAACAACAACAACAACAA CAATCATCGACACAACAACAACAACAAGATTTAGGATTATCAACACAACAACAACCACAA CAACCACAACAAGAAGATGATAATAATGATCAATATCAAGATATGGCAATACAAGAATTT GATGAATTTAAATCTGATCAAATTAAAATCGATCCATTATTAATACATGATAGAGAATTA ACAGCACAACAACAAAAAGATAAATCTATATTCGCAGAGAAAATAGATACTAAAAAAATT AAAACAGAATCACCACTTCACCGTAGATAC----------
Length of 5' end seq.	630
3' end seq. ID	SFF242Z
3' end seq.	>SFF242Z.Seq ----------GTTTCAGTTTTACAAAGTTCAGTTTCATTTGCAAATATTTTAACAAATTA TAAAAAGTTTAAAATTGAAGATGAAGAAGAAAAGAAAAGAAAAAGATCATCATCATCATC ATCATCGTCATCATTATTATCATCACCAAATGTTAAATCATCACCAAATGGAAGTCCATC AATTATTCCACATTTAAAAAACAGAACTCCAATTATTATTGTACCATCATCATTAACAGC AACAATTTCATTATATAATGTTTTAGAATTTTTACAACATAGTTTGTTTAGACCTACATT AGAAAAGAAACAAGAGATGGCATCACAAAATATAATCAAACCACCAATGATTACATTTGA TAGAATTACAACTCAAAAAGTTACATATGAAGTTATTGATAATATTAAAAGTTTAAAACC TGAAGATTGGTATAGAGTGGTGGCTGCATTTGTTCAAGGTGAAGCTTGGCAATTTAAAGA TTGGAAATGGAGTAATCCTGCTGATTTATTTGCAAATATCAGAGGTTTTTATGTTAAATT TGATGATTCAAATCTACCTGATGTCGTCAAATCTTGGGATGTNAAGTATTACATATAAGT AAATCTAAAAGACATTTAGATCACACAGCACAAGTTNAATTCTGGAATGCATTTGACGAT TTTACAAATGCAAAGAAATCTACCTAATCATGATCANATTATATTGTAAGAAT
Length of 3' end seq.	703
Connected seq. ID	SFF242P
Connected seq.	>SFF242P.Seq AGTTTATTTTTTACATTCAAATCGTACTTTAAATATGGTGCTTATATTTTAGCTGCATCA AGAAGTAATATTCAAGCTGTAAATTTCAATGATAAAAAAGAATTATTAAGTTATTTAGAT GGTGGTGAAATTACAGCATCGATTCAATTTGATTCGTTACCAACATCAACACCAACAATG TTGGGTAGTATTTCAACAGCGGATGATACAATAACAATACCAGAGGGACAATCAATTCAA CAAATGGACCAAGATTCACAAAAACAATCAGATGAAACAACTTCTTCAACTCAATTACCA TTTGGTGGTAGTTTAACTCAAAAAGAACAAGAACAAATCGACCAACAACAACAACAACAA CAATCATCGACACAACAACAACAACAAGATTTAGGATTATCAACACAACAACAACCACAA CAACCACAACAAGAAGATGATAATAATGATCAATATCAAGATATGGCAATACAAGAATTT GATGAATTTAAATCTGATCAAATTAAAATCGATCCATTATTAATACATGATAGAGAATTA ACAGCACAACAACAAAAAGATAAATCTATATTCGCAGAGAAAATAGATACTAAAAAAATT AAAACAGAATCACCACTTCACCGTAGATAC----------GTTTCAGTTTTACAAAGTTC AGTTTCATTTGCAAATATTTTAACAAATTATAAAAAGTTTAAAATTGAAGATGAAGAAGA AAAGAAAAGAAAAAGATCATCATCATCATCATCATCGTCATCATTATTATCATCACCAAA TGTTAAATCATCACCAAATGGAAGTCCATCAATTATTCCACATTTAAAAAACAGAACTCC AATTATTATTGTACCATCATCATTAACAGCAACAATTTCATTATATAATGTTTTAGAATT TTTACAACATAGTTTGTTTAGACCTACATTAGAAAAGAAACAAGAGATGGCATCACAAAA TATAATCAAACCACCAATGATTACATTTGATAGAATTACAACTCAAAAAGTTACATATGA AGTTATTGATAATATTAAAAGTTTAAAACCTGAAGATTGGTATAGAGTGGTGGCTGCATT TGTTCAAGGTGAAGCTTGGCAATTTAAAGATTGGAAATGGAGTAATCCTGCTGATTTATT TGCAAATATCAGAGGTTTTTATGTTAAATTTGATGATTCAAATCTACCTGATGTCGTCAA ATCTTGGGATGTNAAGTATTACATATAAGTAAATCTAAAAGACATTTAGATCACACAGCA CAAGTTNAATTCTGGAATGCATTTGACGATTTTACAAATGCAAAGAAATCTACCTAATCA TGATCANATTATATTGTAAGAAT
Length of connected seq.	1333
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas