SFF229
Library SF
(Link to library)
Clone ID SFF229
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16287-1
Original site URL
Representative seq. ID SFF229Z
(Link to Original site)
Representative DNA sequence
>SFF229 (SFF229Q) /CSM/SF/SFF2-B/SFF229Q.Seq.d/
XXXXXXXXXXCTTGATATACCAATTTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCAC
CCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATG
GCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTA
AAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAA
CATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTT
TGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTT
TCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTG
CACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTG
ACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACT
TACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---LIYQFHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGK
NDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIF
ISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNL
PDIVVQRVLIRHGFSH


Translated Amino Acid sequence (All Frames)
Frame A:
---LIYQFHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGK
NDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIF
ISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNL
PDIVVQRVLIRHGFSH


Frame B:
---*ytnfmsmqqvvvslhpffnqklfgildyhvlnqlmalvinlvylhwelagsygevk
mtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv*imvfs
fpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpilyqty
qil*fkey*ldmvsvi


Frame C:
---dipiscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswlgrmer*k
*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrsssslsrswyfh
fqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancilystklt
rycssksin*twfqsl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF229 (SFF229Q) /CSM/SF/SFF2-B/SFF229Q.Seq.d/ 1154 0.0
SFG754 (SFG754Q) /CSM/SF/SFG7-C/SFG754Q.Seq.d/ 1138 0.0
SFA821 (SFA821Q) /CSM/SF/SFA8-A/SFA821Q.Seq.d/ 1138 0.0
CFI817 (CFI817Q) /CSM/CF/CFI8-A/CFI817Q.Seq.d/ 1138 0.0
AFO558 (AFO558Q) /CSM/AF/AFO5-C/AFO558Q.Seq.d/ 1138 0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/ 1134 0.0
SFL288 (SFL288Q) /CSM/SF/SFL2-D/SFL288Q.Seq.d/ 1134 0.0
SFK622 (SFK622Q) /CSM/SF/SFK6-A/SFK622Q.Seq.d/ 1134 0.0
SFH461 (SFH461Q) /CSM/SF/SFH4-C/SFH461Q.Seq.d/ 1134 0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/ 1134 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence. 58 2e-07 2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence. 60 5e-06 2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence. 60 5e-06 2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence. 60 6e-06 2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence. 60 7e-06 2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence. 60 7e-06 2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence. 58 2e-05 2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds. 50 3e-05 2
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence. 42 4e-05 2
CF514038|CF514038.1 CAbud0007_IVF_G07 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0007_IVF_G07 5', mRNA sequence. 60 4e-05 1
dna update 2003.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 284 1e-75
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 281 1e-74
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp... 276 4e-73
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 276 4e-73
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345... 274 1e-72
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 265 7e-70
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n... 258 1e-67
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320... 256 4e-67
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul... 255 7e-67
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t... 252 6e-66
protein update 2009. 5.24
PSORT

psg: 0.75 gvh: 0.42 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for SFF229 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFF229Z
3' end seq.
>SFF229Z.Seq
----------CTTGATATACCAATTTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCAC
CCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATG
GCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTA
AAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAA
CATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTT
TGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTT
TCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTG
CACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTG
ACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACT
TACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATTA
Length of 3' end seq. 582
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -