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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFF194
Library SF
(Link to library)
Clone ID SFF194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16437-1
Original site URL
Representative seq. ID SFF194Z
(Link to Original site)
Representative DNA sequence 
>SFF194 (SFF194Q) /CSM/SF/SFF1-D/SFF194Q.Seq.d/
XXXXXXXXXXCTNNCNNNCNCTTCANCTACACCTAGAAATACCACAAACACTTACAAATG
CCTCTACTACACCTACAACAACAACAACAACAACAACTACTACCACACCAACAAAAGATG
AAACTATAAATGAATCAGTTCAAGTTAATAATGATAAATTGAAATCTCCAAGTGGTGATG
ATATTAAACAAGAACAAGATGAAATGAATCAATTTACATCACAACATCCAAATAATCAAA
TGGAATCAAGTTCAGAAGTTAACCAACAAAATGAACAAAGTCAATTAGAACAACAACAAG
AACAACAGCAACAACAAGAACAACAGCTACAACATGAACAACAACAAATCGAACAACAAC
AACTACAAAAACAACAACAACAACAAGAACAACAAGAACAACAAGAACTAGAACAACAAG
AACAACCAAATGAAACTATAACTTATAGTATGGAATCAGATTCTCAATCTTCAATTTCTC
AAAATCAAAACCAATTCAACAACAACAACAACAACAAACATTACTTGACCCAATCGATGA
ATCATCTTTATTGGCTACAACAACTACAACTACTTCATCAACAGCAATTACATCAGCAGT
AAACTNAAAAAGAATTAGAAAACAAGAAAAAGAAAAAAGAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---XXXLXLHLEIPQTLTNASTTPTTTTTTTTTTTPTKDETINESVQVNNDKLKSPSGDD
IKQEQDEMNQFTSQHPNNQMESSSEVNQQNEQSQLEQQQEQQQQQEQQLQHEQQQIEQQQ
LQKQQQQQEQQEQQELEQQEQPNETITYSMESDSQSSISQNQNQFNNNNNNKHYLTQSMN
HLYWLQQLQLLHQQQLHQQ*txkelenkkkkken
Translated Amino Acid sequence (All Frames) 
Frame A:
---XXXLXLHLEIPQTLTNASTTPTTTTTTTTTTTPTKDETINESVQVNNDKLKSPSGDD
IKQEQDEMNQFTSQHPNNQMESSSEVNQQNEQSQLEQQQEQQQQQEQQLQHEQQQIEQQQ
LQKQQQQQEQQEQQELEQQEQPNETITYSMESDSQSSISQNQNQFNNNNNNKHYLTQSMN
HLYWLQQLQLLHQQQLHQQ*txkelenkkkkken


Frame B:
---xxxfxyt*kyhkhlqmpllhlqqqqqqqllphqqkmkl*mnqfklimin*nlqvvmi
lnknkmk*inlhhniqiikwnqvqkltnkmnkvn*nnnknnsnnknnsynmnnnksnnnn
yknnnnnknnknnkn*nnknnqmkl*livwnqilnlqflkiktnsttttttnit*pnr*i
ifigynnynyfinsnyissklkkn*ktrkrkkk


Frame C:
---xxxsxtprnttntykclyytynnnnnnnyyhtnkr*nyk*isss****ieiskw**y
*trtr*nesiyittsk*sngikfrs*ptk*tksirtttrttattrttatt*tttnrtttt
tktttttrttrttrtrttrttk*nynl*ygirfsifnfskskpiqqqqqqqtlldpides
sllattttttsstaitsavnxkrirkqekekrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF194 (SFF194Q) /CSM/SF/SFF1-D/SFF194Q.Seq.d/                        319   3e-86
VHC396 (VHC396Q) /CSM/VH/VHC3-D/VHC396Q.Seq.d/                        317   1e-85
SHG230 (SHG230Q) /CSM/SH/SHG2-B/SHG230Q.Seq.d/                        317   1e-85
CHG886 (CHG886Q) /CSM/CH/CHG8-D/CHG886Q.Seq.d/                        317   1e-85
CHF423 (CHF423Q) /CSM/CH/CHF4-A/CHF423Q.Seq.d/                        317   1e-85
CFH446 (CFH446Q) /CSM/CF/CFH4-B/CFH446Q.Seq.d/                        317   1e-85
CFG854 (CFG854Q) /CSM/CF/CFG8-C/CFG854Q.Seq.d/                        317   1e-85
AHJ117 (AHJ117Q) /CSM/AH/AHJ1-A/AHJ117Q.Seq.d/                        317   1e-85
AHI703 (AHI703Q) /CSM/AH/AHI7-A/AHI703Q.Seq.d/                        317   1e-85
AHF818 (AHF818Q) /CSM/AH/AHF8-A/AHF818Q.Seq.d/                        317   1e-85
own update 2002.10. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ314911|AJ314911.1 Dictyostelium discoideum DrnA gene for putative RNaseIII, exons 1-3.    38   0.008  4
AB055060|AB055060.1 Catharanthus roseus gene for alternative oxidase, complete cds.    48   0.020  2
AB009395|AB009395.1 Catharanthus roseus mRNA for alternative oxidase, complete cds.    48   0.15   1
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   0.32   8
AC018962|AC018962.4 Homo sapiens clone RP11-440H15, WORKING DRAFT SEQUENCE, 13 unordered pieces.    38   0.42   3
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   0.50   7
BE317387|BE317387.2 NF068C10LF1F1070 Developing leaf Medicago truncatula cDNA clone NF068C10LF 5', mRNA sequence.    36   0.53   2
AC079558|AC079558.1 Mus musculus clone RP23-44P12, WORKING DRAFT SEQUENCE, 33 unordered pieces.    46   0.59   1
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    38   0.60   6
BE249770|BE249770.2 NF022C10LF1F1081 Developing leaf Medicago truncatula cDNA clone NF022C10LF 5', mRNA sequence.    36   0.61   2
dna update 2003.12.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000282_376(CP000282|pid:none) Saccharophagus degradans 2-40, c...    33   5.2
protein update 2009. 1. 9
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SFF194 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFF194Z
3' end seq. 
>SFF194Z.Seq
----------CTNNCNNNCNCTTCANCTACACCTAGAAATACCACAAACACTTACAAATG
CCTCTACTACACCTACAACAACAACAACAACAACAACTACTACCACACCAACAAAAGATG
AAACTATAAATGAATCAGTTCAAGTTAATAATGATAAATTGAAATCTCCAAGTGGTGATG
ATATTAAACAAGAACAAGATGAAATGAATCAATTTACATCACAACATCCAAATAATCAAA
TGGAATCAAGTTCAGAAGTTAACCAACAAAATGAACAAAGTCAATTAGAACAACAACAAG
AACAACAGCAACAACAAGAACAACAGCTACAACATGAACAACAACAAATCGAACAACAAC
AACTACAAAAACAACAACAACAACAAGAACAACAAGAACAACAAGAACTAGAACAACAAG
AACAACCAAATGAAACTATAACTTATAGTATGGAATCAGATTCTCAATCTTCAATTTCTC
AAAATCAAAACCAATTCAACAACAACAACAACAACAAACATTACTTGACCCAATCGATGA
ATCATCTTTATTGGCTACAACAACTACAACTACTTCATCAACAGCAATTACATCAGCAGT
AAACTNAAAAAGAATTAGAAAACAAGAAAAAGAAAAAAGAAAAT
Length of 3' end seq. 634
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -