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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFF183
Library SF
(Link to library)
Clone ID SFF183
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16317-1
Original site URL
Representative seq. ID SFF183Z
(Link to Original site)
Representative DNA sequence 
>SFF183 (SFF183Q) /CSM/SF/SFF1-D/SFF183Q.Seq.d/
XXXXXXXXXXCACCAGTTGNAGAAGNCGCCGCAACCAACNCCACAACCAACTACAAATCA
ATATGCTTCCGAATCCAATATCCNAACCCTTATTGGACTCGGTTGTTCAAGAGATAAGGC
AATTAGACTTTAACTCAAGCTAAAGGCAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---TSXRXRRNQXHNQLQINMLPNPISXPLLDSVVQEIRQLDFNSS*rq
Translated Amino Acid sequence (All Frames) 
Frame A:
---TSXRXRRNQXHNQLQINMLPNPISXPLLDSVVQEIRQLDFNSS*rq


Frame B:
---pvxexaatnxttnyksicfriqypnpywtrlfkr*gn*tltqakgn


Frame C:
---qlxkxpqptpqpttnqyasesnixtliglgcsrdkairl*lklka
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF183 (SFF183Q) /CSM/SF/SFF1-D/SFF183Q.Seq.d/                        254   3e-67
AFJ136 (AFJ136Q) /CSM/AF/AFJ1-B/AFJ136Q.Seq.d/                        214   3e-55
AFK423 (AFK423Q) /CSM/AF/AFK4-A/AFK423Q.Seq.d/                        210   4e-54
CHA270 (CHA270Q) /CSM/CH/CHA2-C/CHA270Q.Seq.d/                        208   2e-53
AFJ794 (AFJ794Q) /CSM/AF/AFJ7-D/AFJ794Q.Seq.d/                        208   2e-53
VFB232 (VFB232Q) /CSM/VF/VFB2-B/VFB232Q.Seq.d/                        206   6e-53
SFL195 (SFL195Q) /CSM/SF/SFL1-D/SFL195Q.Seq.d/                        206   6e-53
SFG344 (SFG344Q) /CSM/SF/SFG3-B/SFG344Q.Seq.d/                        206   6e-53
CHA120 (CHA120Q) /CSM/CH/CHA1-A/CHA120Q.Seq.d/                        206   6e-53
AFK353 (AFK353Q) /CSM/AF/AFK3-C/AFK353Q.Seq.d/                        206   6e-53
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BW307787|BW307787.1 Ciona intestinalis cDNA, clone:ciht017m10, 5' end, single read.    46   0.12   1
AC114402|AC114402.2 Homo sapiens chromosome 1 clone RP11-397P13, complete sequence.    40   7.6    1
AL356096|AL356096.11 Human DNA sequence from clone RP11-366K1 on chromosome 13.    40   7.6    1
dna update 2003. 2.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JB0) RecName: Full=Protein DDI1 homolog;                           46   3e-04
protein update 2009. 1. 9
PSORT 

 psg: 0.80  gvh: 0.46  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SFF183 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFF183Z
3' end seq. 
>SFF183Z.Seq
----------CACCAGTTGNAGAAGNCGCCGCAACCAACNCCACAACCAACTACAAATCA
ATATGCTTCCGAATCCAATATCCNAACCCTTATTGGACTCGGTTGTTCAAGAGATAAGGC
AATTAGACTTTAACTCAAGCTAAAGGCAAT
Length of 3' end seq. 140
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -