>SFF161 (SFF161Q) /CSM/SF/SFF1-C/SFF161Q.Seq.d/
XXXXXXXXXXAGCTAAAACCGGTGAAATGATGGGTACAGCCAAAGAGGTTGGTGACAAAT
GTGCTCATTGGACAACTGAACAAACTCAAGCATTTTGTGATAAATGTACCGAATTAGCCA
AGAATGCTAAACTCATGGCCAACGATGCAAAGGAAACTANTGAAAAGAAAGTTGAAGAAG
GAAAAGAGAAGGCTGGTGAACTAACTGAAGATGCCAAAAAGAAAGCAGCCGAACTCAACG
ATGAAGCTAAAAAGAAAGCTGAACACTTGGCCGAGGACACAAAGAAAGCCACTGCTGAAA
CCAAAGAAAAGTTGGATGAAACTGCCAAGAAATGTGAACATTGGACAGCTGAACAAAAAG
AAAGCATATGTAACAAATGTTCTGAATTAGCTAAAGACGCAAATAAAACCAAAGATCAAT
TAGCAGCAAATGCAGAGAAAACAGCTGAAAATACCAAAGAAAAGTTGGACGAAACCGCAA
AGAAATGTGAACATTGGACCGCTGAACAAAAAGAAAACATATGTAGCAAATGTTCTGAAT
TAACCAAAGATACCAAAGAAGCCGCTGACCATGCCTCTGAAGCCGTTAAAGATGCTGCTN
ACAATCTAAANATAAAGTTCAAAAGAAAGGTAGAGGTGACCAAAGAAACATT

---AKTGEMMGTAKEVGDKCAHWTTEQTQAFCDKCTELAKNAKLMANDAKETXEKKVEEG
KEKAGELTEDAKKKAAELNDEAKKKAEHLAEDTKKATAETKEKLDETAKKCEHWTAEQKE
SICNKCSELAKDANKTKDQLAANAEKTAENTKEKLDETAKKCEHWTAEQKENICSKCSEL
TKDTKEAADHASEAVKDAAXNLXIKFKRKVEVTKET

Frame A:
---AKTGEMMGTAKEVGDKCAHWTTEQTQAFCDKCTELAKNAKLMANDAKETXEKKVEEG
KEKAGELTEDAKKKAAELNDEAKKKAEHLAEDTKKATAETKEKLDETAKKCEHWTAEQKE
SICNKCSELAKDANKTKDQLAANAEKTAENTKEKLDETAKKCEHWTAEQKENICSKCSEL
TKDTKEAADHASEAVKDAAXNLXIKFKRKVEVTKET


Frame B:
---lkpvk*wvqpkrlvtnvligqlnklkhfvinvpn*prmlnswptmqrklxkrklkke
krrlvn*lkmpkrkqpnstmklkrklntwprtqrkpllkpkkswmklprnvnigqlnkkk
ayvtnvln*lktqikpkin*qqmqrkqlkipkkswtkpqrnvnigplnkkktyvanvln*
pkipkkpltmplkplkmllti*x*ssker*r*pkkh


Frame C:
---*nr*ndgysqrgw*qmcsldn*tnssil**myrisqec*thgqrckgnx*kes*rrk
regw*tn*rcqkessrtqr*s*kes*tlgrghkeshc*nqrkvg*ncqem*tlds*tkrk
hm*qmf*is*rrk*nqrsisskcrens*kyqrkvgrnrkem*tldr*tkrkhm*qmf*in
qryqrsr*pcl*sr*rccxqskxkvqkkgrgdqrni

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF161 (SFF161Q) /CSM/SF/SFF1-C/SFF161Q.Seq.d/                       1255   0.0
CFA584 (CFA584Q) /CSM/CF/CFA5-D/CFA584Q.Seq.d/                       1201   0.0
SFG579 (SFG579Q) /CSM/SF/SFG5-D/SFG579Q.Seq.d/                       1191   0.0
CFA818 (CFA818Q) /CSM/CF/CFA8-A/CFA818Q.Seq.d/                       1179   0.0
CFK282 (CFK282Q) /CSM/CF/CFK2-D/CFK282Q.Seq.d/                       1174   0.0
SFI158 (SFI158Q) /CSM/SF/SFI1-C/SFI158Q.Seq.d/                       1166   0.0
SLB754 (SLB754Q) /CSM/SL/SLB7-C/SLB754Q.Seq.d/                       1150   0.0
SFK639 (SFK639Q) /CSM/SF/SFK6-B/SFK639Q.Seq.d/                       1146   0.0
AFN734 (AFN734Q) /CSM/AF/AFN7-B/AFN734Q.Seq.d/                       1146   0.0
AFG649 (AFG649Q) /CSM/AF/AFG6-C/AFG649Q.Seq.d/                       1144   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY044086|AY044086.1 Dictyostelium discoideum Rho GDP-dissociation inhibitor-like protein (rdiB) gene, complete cds; and unknown gene.  1154   0.0    3
AC138697|AC138697.2 Homo sapiens chromosome 11 clone RP11-242O20 map 11, WORKING DRAFT SEQUENCE, 1 ordered piece.    38   7e-07  11
AC138945|AC138945.1 Homo sapiens chromosome 5 clone RP11-775M24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36   8e-04  9
AC144535|AC144535.4 Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38   0.002  9
AC107971|AC107971.8 Homo sapiens chromosome 11, clone CTD-2307F18, complete sequence.    42   0.011  9
AC140529|AC140529.1 Homo sapiens chromosome 5 clone RP11-999M7, WORKING DRAFT SEQUENCE, 6 unordered pieces.    34   0.014  9
AZ530504|AZ530504.1 ENTCM24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42   0.025  2
BH133594|BH133594.1 ENTNU33TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42   0.027  2
AZ549338|AZ549338.1 ENTFQ32TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42   0.027  2
BH157949|BH157949.1 ENTSW83TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42   0.028  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ196430_1(DQ196430|pid:none) Phaseolus vulgaris group 3 late em...    55   2e-06
AE015450_320(AE015450|pid:none) Mycoplasma gallisepticum strain ...    47   6e-04
AL080282_18(AL080282|pid:none) Arabidopsis thaliana DNA chromoso...    46   8e-04
(Q08695) Axoneme-associated protein mst101(1).  &S34153(S34153) ...    46   0.001
CP000529_2493(CP000529|pid:none) Polaromonas naphthalenivorans C...    45   0.002
AL132969_20(AL132969|pid:none) Arabidopsis thaliana DNA chromoso...    45   0.002
(Q03968) RecName: Full=Late embryogenesis abundant protein, grou...    45   0.002
AY148490_1(AY148490|pid:none) Triticum aestivum LEA1 protein (LE...    45   0.002
Z73975_1(Z73975|pid:none) Caenorhabditis elegans Cosmid T06E8, c...    44   0.003
CP000530_47(CP000530|pid:none) Polaromonas naphthalenivorans CJ2...    44   0.003

 psg: 0.53  gvh: 0.32  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for SFF161 is nuc

>SFF161Z.Seq
----------AGCTAAAACCGGTGAAATGATGGGTACAGCCAAAGAGGTTGGTGACAAAT
GTGCTCATTGGACAACTGAACAAACTCAAGCATTTTGTGATAAATGTACCGAATTAGCCA
AGAATGCTAAACTCATGGCCAACGATGCAAAGGAAACTANTGAAAAGAAAGTTGAAGAAG
GAAAAGAGAAGGCTGGTGAACTAACTGAAGATGCCAAAAAGAAAGCAGCCGAACTCAACG
ATGAAGCTAAAAAGAAAGCTGAACACTTGGCCGAGGACACAAAGAAAGCCACTGCTGAAA
CCAAAGAAAAGTTGGATGAAACTGCCAAGAAATGTGAACATTGGACAGCTGAACAAAAAG
AAAGCATATGTAACAAATGTTCTGAATTAGCTAAAGACGCAAATAAAACCAAAGATCAAT
TAGCAGCAAATGCAGAGAAAACAGCTGAAAATACCAAAGAAAAGTTGGACGAAACCGCAA
AGAAATGTGAACATTGGACCGCTGAACAAAAAGAAAACATATGTAGCAAATGTTCTGAAT
TAACCAAAGATACCAAAGAAGCCGCTGACCATGCCTCTGAAGCCGTTAAAGATGCTGCTN
ACAATCTAAANATAAAGTTCAAAAGAAAGGTAGAGGTGACCAAAGAAACATT