SFF155
Library SF
(Link to library)
Clone ID SFF155
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFF155Z
(Link to Original site)
Representative DNA sequence
>SFF155 (SFF155Q) /CSM/SF/SFF1-C/SFF155Q.Seq.d/
XXXXXXXXXXTATATTTCTGATTTCATTGAACCAATTGCTGATGGTNCTGCCGACAATGT
TTTCATCTCAAGATCATATGATGCTACCTCTCACTTTGAAACCACTTGTGAAGATGTCAT
GGATATGTACAAGAGAATCACNGGTAAAGATTTAGTTCTCACTGTTCATCCAAATTTCTC
AAACAACAAGAAGAAGCNNGTAACCAAGAACAAGAAGAACA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---ISDFIEPIADGXADNVFISRSYDATSHFETTCEDVMDMYKRITGKDLVLTVHPNFSN
NKKKXVTKNKKN


Translated Amino Acid sequence (All Frames)
Frame A:
---iflislnqllmvlptmfssqdhmmlpltlkplvkmswictresxvki*fslfiqisq
ttrrsx*prtrrt


Frame B:
---yf*fh*tnc*wxcrqcfhlkii*cylsl*nhl*rchgyvqenhx*rfsshcsskflk
qqeeaxnqeqee


Frame C:
---ISDFIEPIADGXADNVFISRSYDATSHFETTCEDVMDMYKRITGKDLVLTVHPNFSN
NKKKXVTKNKKN


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF155 (SFF155Q) /CSM/SF/SFF1-C/SFF155Q.Seq.d/ 394 e-109
SSM469 (SSM469Q) /CSM/SS/SSM4-C/SSM469Q.Seq.d/ 365 e-100
SSD420 (SSD420Q) /CSM/SS/SSD4-A/SSD420Q.Seq.d/ 365 e-100
SLF383 (SLF383Q) /CSM/SL/SLF3-D/SLF383Q.Seq.d/ 365 e-100
SLC496 (SLC496Q) /CSM/SL/SLC4-D/SLC496Q.Seq.d/ 365 e-100
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/ 355 2e-97
SSB135 (SSB135Q) /CSM/SS/SSB1-B/SSB135Q.Seq.d/ 349 1e-95
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/ 347 4e-95
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/ 345 2e-94
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/ 341 3e-93

own update 2001.11.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ640802|BQ640802.1 TVEST005.G04 Tv30236_PT cDNA Library Trichomonas vaginalis cDNA 5' similar to THROMBOSPONDIN-RELATED PROTEIN, mRNA sequence. 38 0.007 2
AC129773|AC129773.3 Mus musculus chromosome UNK clone RP24-73D4, WORKING DRAFT SEQUENCE, 2 unordered pieces. 38 0.029 2
AU213542|AU213542.1 Caenorhabditis elegans cDNA clone:yk801c10 : 3' end, single read. 48 0.048 1
AU209832|AU209832.1 Caenorhabditis elegans cDNA clone:yk749c08 : 3' end, single read. 48 0.048 1
AU210006|AU210006.1 Caenorhabditis elegans cDNA clone:yk751g06 : 3' end, single read. 48 0.048 1
AU209939|AU209939.1 Caenorhabditis elegans cDNA clone:yk750g06 : 3' end, single read. 48 0.048 1
BJ137816|BJ137816.1 Caenorhabditis elegans cDNA clone:yk1128e03 : 3' end, single read. 48 0.048 1
AU216378|AU216378.1 Caenorhabditis elegans cDNA clone:yk837a10 : 3' end, single read. 48 0.048 1
AU212562|AU212562.1 Caenorhabditis elegans cDNA clone:yk786h01 : 3' end, single read. 48 0.048 1
BJ134979|BJ134979.1 Caenorhabditis elegans cDNA clone:yk1094f10 : 3' end, single read. 48 0.048 1
dna update 2003.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR954218_209(CR954218|pid:none) Ostreococcus tauri strain OTTH05... 72 8e-12
T10801(T10801) GDP dissociation inhibitor GDI1 - Volvox carteri ... 70 3e-11
BC095329_1(BC095329|pid:none) Danio rerio GDP dissociation inhib... 68 8e-11
S36746(S36746;S62097;S37806)GDP dissociation inhibitor - fruit f... 65 7e-10
AE014134_1714(AE014134|pid:none) Drosophila melanogaster chromos... 65 7e-10
AP007159_468(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 65 9e-10
AF255332_1(AF255332|pid:none) Kluyveromyces lactis putative GDP ... 65 9e-10
AM920430_64(AM920430|pid:none) Penicillium chrysogenum Wisconsin... 64 1e-09
AE017347_16(AE017347|pid:none) Cryptococcus neoformans var. neof... 64 2e-09
AM270003_39(AM270003|pid:none) Aspergillus niger contig An02c008... 64 2e-09
protein update 2009. 5.24
PSORT

psg: 0.75 gvh: 0.28 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SFF155 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFF155Z
3' end seq.
>SFF155Z.Seq
----------TATATTTCTGATTTCATTGAACCAATTGCTGATGGTNCTGCCGACAATGT
TTTCATCTCAAGATCATATGATGCTACCTCTCACTTTGAAACCACTTGTGAAGATGTCAT
GGATATGTACAAGAGAATCACNGGTAAAGATTTAGTTCTCACTGTTCATCCAAATTTCTC
AAACAACAAGAAGAAGCNNGTAACCAAGAACAAGAAGAACA
Length of 3' end seq. 211
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -