SFF142
Library SF
(Link to library)
Clone ID SFF142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID SFF142P
(Link to Original site)
Representative DNA sequence
>SFF142 (SFF142Q) /CSM/SF/SFF1-B/SFF142Q.Seq.d/
ACAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTCCTTTAACGAATATCCA
TTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGG
GGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACT
GTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAAA
GTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAA
GCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATT
TACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGGT
TTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATG
GAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCC
GTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATGGAAGGGX
XXXXXXXXXAAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANA
TCAGTGGTGGAAACTTTGTTGAACCNACCGTCGTTGCCATTGAACATGATGCTCCNATNG
TAAAGACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACGATG
CTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAACAATC
AAAANAATATNTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTAA
ATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAANAGACCGGAG
GTGGTANAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCG
sequence update 2001. 6. 1
Translated Amino Acid sequence
TKTFSNKTDKLKNDSFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMICGNVQLWK---

---IKKQGGKVVIGGNKLXISGGNFVEPTVVAIEHDAPXVKTELFVPIXYIMKFKNXDDA
FAWNNEVPQGXSXSLFXNNQXNXFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGEKXTGG
GXESGSDSWKQYCR


Translated Amino Acid sequence (All Frames)
Frame A:
TKTFSNKTDKLKNDSFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMICGNVQLWK---

---k*kskvvrsslvvinsxsvvetllnxpslplnmmlxx*rlnxlfqxxt**nskxltm
llpgimksxkvxhxpxsqtikxixsngldxpdltvx*lt*mxlxtvlklvxplevkxrpe
vvxnlaqtagnsiav

Frame B:
qkhflikqin*kmtpltnihswln*alklkimmessmengevlvkssnv*iqqiikllql
levlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvkf
tlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishvp
ylvgmlqsq*favtsnygr---

---nkkarw*grhww**trxqwwklc*txrrch*t*csxxkd*txcsnxxhneiqkx*rc
fcle**spxrxxxfpxxkqskxyxqmawtxri*lwxs*rkxsyxrc*nwwxxwr*kxdrr
wxriwlrqletvlps

Frame C:
knif**nr*ikk*ll*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycnc
*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*nl
h*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmcr
twleccnlndlr*rpimeg---

---IKKQGGKVVIGGNKLXISGGNFVEPTVVAIEHDAPXVKTELFVPIXYIMKFKNXDDA
FAWNNEVPQGXSXSLFXNNQXNXFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGEKXTGG
GXESGSDSWKQYCR

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF142 (SFF142Q) /CSM/SF/SFF1-B/SFF142Q.Seq.d/ 1721 0.0
VFJ372 (VFJ372Q) /CSM/VF/VFJ3-C/VFJ372Q.Seq.d/ 1178 0.0
VFA221 (VFA221Q) /CSM/VF/VFA2-A/VFA221Q.Seq.d/ 1176 0.0
CFA502 (CFA502Q) /CSM/CF/CFA5-A/CFA502Q.Seq.d/ 1166 0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/ 1164 0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1164 0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/ 1164 0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/ 1164 0.0
SFH477 (SFH477Q) /CSM/SF/SFH4-D/SFH477Q.Seq.d/ 1164 0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/ 1164 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 807 0.0 9
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 74 6e-12 2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 72 1e-08 2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds. 46 4e-06 2
BJ550374|BJ550374.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah41j06, 5' mRNA sequence. 44 7e-06 4
BF200236|BF200236.1 WHE2254_E08_J16ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE2254_E08_J16, mRNA sequence. 52 1e-05 3
AJ615957|AJ615957.1 Triticum turgidum EST, clone 12415R. 52 3e-05 3
BQ806838|BQ806838.1 WHE3583_G06_M11ZS Wheat developing grains cDNA library Triticum aestivum cDNA clone WHE3583_G06_M11, mRNA sequence. 44 4e-05 4
AJ614830|AJ614830.1 Triticum turgidum EST, clone 10801R. 52 4e-05 3
BG444603|BG444603.1 GA__Ea0024O05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0024O05f, mRNA sequence. 42 2e-04 2
dna update 2003.12.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 381 e-104
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 242 2e-62
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 238 2e-61
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 238 3e-61
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 232 1e-59
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 232 2e-59
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 230 5e-59
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 230 5e-59
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 230 6e-59
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 228 2e-58
protein update 2009. 5.24
PSORT

psg: 0.46 gvh: 0.29 alm: 0.29 top: 0.90 tms: 0.07 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SFF142 is cyt

5' end seq. ID SFF142F
5' end seq.
>SFF142F.Seq
ACAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTCCTTTAACGAATATCCA
TTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGG
GGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACT
GTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAAA
GTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAA
GCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATT
TACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGGT
TTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATG
GAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCC
GTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATGGAAGGG-
---------
Length of 5' end seq. 599
3' end seq. ID SFF142Z
3' end seq.
>SFF142Z.Seq
----------AAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGAN
ATCAGTGGTGGAAACTTTGTTGAACCNACCGTCGTTGCCATTGAACATGATGCTCCNATN
GTAAAGACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACGAT
GCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAACAAT
CAAAANAATATNTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTA
AATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAANAGACCGGA
GGTGGTANAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCG
Length of 3' end seq. 397
Connected seq. ID SFF142P
Connected seq.
>SFF142P.Seq
ACAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTCCTTTAACGAATATCCA
TTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGG
GGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACT
GTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAAA
GTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAA
GCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATT
TACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGGT
TTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATG
GAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCC
GTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATGGAAGGG-
---------AAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANA
TCAGTGGTGGAAACTTTGTTGAACCNACCGTCGTTGCCATTGAACATGATGCTCCNATNG
TAAAGACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACGATG
CTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAACAATC
AAAANAATATNTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTAA
ATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAANAGACCGGAG
GTGGTANAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCG
Length of connected seq. 996
Full length Seq ID -
Full length Seq. -
Length of full length seq. -