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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFF141
Library SF
(Link to library)
Clone ID SFF141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID SFF141P
(Link to Original site)
Representative DNA sequence 
>SFF141 (SFF141Q) /CSM/SF/SFF1-B/SFF141Q.Seq.d/
AAATTNTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACAT
TTCATAAAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCCCCTTTTTNGAAAAAAAAAA
XXXXXXXXXXTGGTATGCAATNTTNGAAAGACCCTCNCCGGTAAGACTATACACTCGAAG
TGAAGGTAGTGNCACCTTGAGAATGTAAAACCAAGATTCAGATAAGAAGGTATTCCNCCA
GATCAACAACGTNTCATTTCGCTGGTAACAATTAGAAGATGGTCGTACTCTCTCTGATTA
CAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAAT
CTTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATA
TTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGAT
TAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAA
AGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAA
CCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTCCTGATAACATTGAGAATGTTA
AAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCG
GTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTC
TCCATTTAGTTCTCAGGTTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTA
AAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTC
AAGACAAAGAAGGTATNCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
IXFIIQILNSYFIFLYIVTFHKKKKKKKKXKKXPFXKKK---

---WYAXXERPSPVRLYTRSEGSXTLRM*nqdsdkkvfxqinnvsfrw*qledgrtlsdy
niqkestlhlvlrlrggmqifcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrptki
nfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rs**h*ec*
sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqvkrwyanfcknshw*
nhytrs*r**qh*ecknknsrqrryx
Translated Amino Acid sequence (All Frames) 
Frame A:
kxfllyky*ihilffyil*hfikkkkkkkxlkxplfxkkk---

---WYAXXERPSPVRLYTRSEGSXTLRM*nqdsdkkvfxqinnvsfrw*qledgrtlsdy
niqkestlhlvlrlrggmqifcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrptki
nfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rs**h*ec*
sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqvkrwyanfcknshw*
nhytrs*r**qh*ecknknsrqrryx

Frame B:
nxfyytnikfifyffiycnis*kkkkkkkx*kxpfxekk---

---gmqxxkdpxr*dytlevkvvxp*ecktkiqirrysxrsttxhfagnn*kmvvlslit
iskknqlstwssd*evvcksfvktltgktitlevegsdnienvktkiqdkegippdqqrl
ifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegpdnienvk
akiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgk
titlevegsdnienvktkiqdkegxp

Frame C:
IXFIIQILNSYFIFLYIVTFHKKKKKKKKXKKXPFXKKK---

---vcnxxktlxgktihsk*r*xhlenvkprfr*egippdqqrxislvtirrwsysl*lq
ypkrinsplgpqikrwyanllskh*lvrpsllklraqiilkmlkqrfktkkvshqtnkd*
fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlk
pksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsg*evvckfl*klslvk
plhsklkvvttlrm*kqkfktkkvx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF141 (SFF141Q) /CSM/SF/SFF1-B/SFF141Q.Seq.d/                       1524   0.0
CFC580 (CFC580Q) /CSM/CF/CFC5-D/CFC580Q.Seq.d/                       1400   0.0
AFK885 (AFK885Q) /CSM/AF/AFK8-D/AFK885Q.Seq.d/                       1396   0.0
CHD282 (CHD282Q) /CSM/CH/CHD2-D/CHD282Q.Seq.d/                       1364   0.0
CFJ754 (CFJ754Q) /CSM/CF/CFJ7-C/CFJ754Q.Seq.d/                       1358   0.0
CFC718 (CFC718Q) /CSM/CF/CFC7-A/CFC718Q.Seq.d/                       1358   0.0
CFC508 (CFC508Q) /CSM/CF/CFC5-A/CFC508Q.Seq.d/                       1358   0.0
CFA741 (CFA741Q) /CSM/CF/CFA7-B/CFA741Q.Seq.d/                       1356   0.0
AFL649 (AFL649Q) /CSM/AF/AFL6-C/AFL649Q.Seq.d/                       1356   0.0
CFF682 (CFF682Q) /CSM/CF/CFF6-D/CFF682Q.Seq.d/                       1354   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1076   0.0    5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1061   0.0    5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1061   0.0    5
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   618   0.0    4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   650   0.0    4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   634   e-178  4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   468   e-175  3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   468   e-175  3
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      170   1e-95  6
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read.   176   2e-95  6
dna update 2003.12.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   360   e-114
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   360   e-114
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   360   e-114
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   356   e-113
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   344   e-109
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   342   e-109
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   342   e-109
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   344   e-109
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   342   e-109
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   342   e-109
protein update 2009. 5.24
PSORT 

 psg: 0.96  gvh: 0.30  alm: 0.31  top: 1.17  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.58  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SFF141 is nuc
5' end seq. ID SFF141F
5' end seq. 
>SFF141F.Seq
AAATTNTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACAT
TTCATAAAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCCCCTTTTTNGAAAAAAAAAA
----------
Length of 5' end seq. 120
3' end seq. ID SFF141Z
3' end seq. 
>SFF141Z.Seq
----------TGGTATGCAATNTTNGAAAGACCCTCNCCGGTAAGACTATACACTCGAAG
TGAAGGTAGTGNCACCTTGAGAATGTAAAACCAAGATTCAGATAAGAAGGTATTCCNCCA
GATCAACAACGTNTCATTTCGCTGGTAACAATTAGAAGATGGTCGTACTCTCTCTGATTA
CAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAAT
CTTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATA
TTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGAT
TAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAA
AGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAA
CCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTCCTGATAACATTGAGAATGTTA
AAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCG
GTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTC
TCCATTTAGTTCTCAGGTTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTA
AAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTC
AAGACAAAGAAGGTATNCCA
Length of 3' end seq. 790
Connected seq. ID SFF141P
Connected seq. 
>SFF141P.Seq
AAATTNTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACAT
TTCATAAAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCCCCTTTTTNGAAAAAAAAAA
----------TGGTATGCAATNTTNGAAAGACCCTCNCCGGTAAGACTATACACTCGAAG
TGAAGGTAGTGNCACCTTGAGAATGTAAAACCAAGATTCAGATAAGAAGGTATTCCNCCA
GATCAACAACGTNTCATTTCGCTGGTAACAATTAGAAGATGGTCGTACTCTCTCTGATTA
CAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAAT
CTTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATA
TTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGAT
TAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAA
AGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAA
CCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTCCTGATAACATTGAGAATGTTA
AAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCG
GTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTC
TCCATTTAGTTCTCAGGTTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTA
AAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTC
AAGACAAAGAAGGTATNCCA
Length of connected seq. 910
Full length Seq ID -
Full length Seq. -
Length of full length seq. -