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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFF129
Library SF
(Link to library)
Clone ID SFF129
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03537-1
Original site URL
Representative seq. ID SFF129P
(Link to Original site)
Representative DNA sequence 
>SFF129 (SFF129Q) /CSM/SF/SFF1-B/SFF129Q.Seq.d/
TGCTATTTAATGAAAAAGTATGTTAAATCTGGAAAAGAGGGAGAATATTTAAGTAACGAT
TCATTAGAAGAAATTAGTGGTATAATTAAGAAAGGTCATTCAGTGTTATATAGAACTGGT
GTTGGTTATTTATCATTAGTATTAGATTCAAATTCAAATCAAAATGGTTTAGTTTCTATA
CACCTTTCACAAGGTTCAATTGAACCATTATCATTTTTAGATTTTTTTAGTAAACCATTA
AATGATGGGAAAACAAATGGAAATCTATCTAGTGGTAGNGGTTTTTATTTTCTAGTTTCA
ACAGATTCAATTGAACCAATTAAATACTATATTAAATTATCATTAXXXXXXXXXXAATAA
CAATACTATTAATAATTGTAATATTATTACATTGCTATTTAATGAAAAAGTATGTTAAAT
CTGGAAAAGAGGGAGAATATTTAAGTAACGATTCATTAGAAGAAATTAGTGGTATAATTA
AGAAAGGTCATTCAGTGTTATATAGAACTGGTGTTGGTTATTTATCATTAGTATTAGATT
CAAATTCAAATCAAAATGGTTTAGTTTCTATACACCTTTCACAAGGTTCAATTGAACCAT
TATCATTTTTAGATTTTTTTAGTAAACCATTAAATGATGGGAAAACAAATGGAAATCTAT
CTAGTGGTAGTGGTTTTTATTTTCTAGTTTCAACAGATTCAATTGAACCAATTAAATACT
ATATTAAATTATCATTACAATATTCAGATTCTTATGTTTTAAATACCTTTTTTAATTGTT
GTTTAGTTTTATTATCTTTAATAATTTCAATACTTTTAATTGTATTTTTTAATAAGAAAT
AAATAACCAAAAATATCCTAATNTTTAAGGAATAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
CYLMKKYVKSGKEGEYLSNDSLEEISGIIKKGHSVLYRTGVGYLSLVLDSNSNQNGLVSI
HLSQGSIEPLSFLDFFSKPLNDGKTNGNLSSGXGFYFLVSTDSIEPIKYYIKLSL---

---ITILLIIVILLHCYLMKKYVKSGKEGEYLSNDSLEEISGIIKKGHSVLYRTGVGYLS
LVLDSNSNQNGLVSIHLSQGSIEPLSFLDFFSKPLNDGKTNGNLSSGSGFYFLVSTDSIE
PIKYYIKLSLQYSDSYVLNTFFNCCLVLLSLIISILLIVFFNKK*itknilxfke*
Translated Amino Acid sequence (All Frames) 
Frame A:
CYLMKKYVKSGKEGEYLSNDSLEEISGIIKKGHSVLYRTGVGYLSLVLDSNSNQNGLVSI
HLSQGSIEPLSFLDFFSKPLNDGKTNGNLSSGXGFYFLVSTDSIEPIKYYIKLSL---

---nnntinncniitllfnekvc*iwkrgrifk*rfirrn*wyn*ersfsvi*nwcwlfi
isirfkfkskwfsfytpftrfn*tiiifrff**tik*wenkwksi*w*wflfssfnrfn*
tn*ily*iiitifrflcfkylf*llfsfiifnnfntfncif**einnqkypnx*gi

Frame B:
ai**ksmlnlekreni*vtih*kklvv*lrkviqcyielvlviyh*y*iqiqikmv*fly
tfhkvqlnhyhf*iflvnh*mmgkqmeiylvvxvfif*fqqiqlnqlntilnyh---

---ITILLIIVILLHCYLMKKYVKSGKEGEYLSNDSLEEISGIIKKGHSVLYRTGVGYLS
LVLDSNSNQNGLVSIHLSQGSIEPLSFLDFFSKPLNDGKTNGNLSSGSGFYFLVSTDSIE
PIKYYIKLSLQYSDSYVLNTFFNCCLVLLSLIISILLIVFFNKK*itknilxfke*

Frame C:
lfnekvc*iwkrgrifk*rfirrn*wyn*ersfsvi*nwcwlfiisirfkfkskwfsfyt
pftrfn*tiiifrff**tik*wenkwksi*w*xflfssfnrfn*tn*ily*iii---

---*qyy**l*yyyiai**ksmlnlekreni*vtih*kklvv*lrkviqcyielvlviyh
*y*iqiqikmv*flytfhkvqlnhyhf*iflvnh*mmgkqmeiylvvvvfif*fqqiqln
qlntilnyhyniqilmf*ipflivv*fyyl**fqyf*lyflirnk*pkis*xlrn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF129 (SFF129Q) /CSM/SF/SFF1-B/SFF129Q.Seq.d/                       1580   0.0
SSA164 (SSA164Q) /CSM/SS/SSA1-C/SSA164Q.Seq.d/                        482   e-135
SSL837 (SSL837Q) /CSM/SS/SSL8-B/SSL837Q.Seq.d/                         42   0.014
SSF456 (SSF456Q) /CSM/SS/SSF4-C/SSF456Q.Seq.d/                         42   0.014
AFL295 (AFL295Q) /CSM/AF/AFL2-D/AFL295Q.Seq.d/                         40   0.056
VSE535 (VSE535Q) /CSM/VS/VSE5-B/VSE535Q.Seq.d/                         38   0.22
SSA728 (SSA728Q) /CSM/SS/SSA7-B/SSA728Q.Seq.d/                         38   0.22
SSA519 (SSA519Q) /CSM/SS/SSA5-A/SSA519Q.Seq.d/                         38   0.22
VSI730 (VSI730Q) /CSM/VS/VSI7-B/VSI730Q.Seq.d/                         36   0.87
VSC414 (VSC414Q) /CSM/VS/VSC4-A/VSC414Q.Seq.d/                         36   0.87
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   4e-11  28
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   5e-11  18
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   2e-10  27
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40   4e-10  15
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    40   9e-10  18
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    32   8e-09  29
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   8e-09  20
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   1e-08  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           34   2e-08  28
AE014017|AE014017.1 Buchnera aphidicola (Baizongia pistaciae), section 2 of 2 of the complete genome.    36   4e-08  16
dna update 2003.12.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000033_1610(CP000033|pid:none) Lactobacillus acidophilus NCFM,...    36   1.9
CP000575_413(CP000575|pid:none) Staphylothermus marinus F1, comp...    35   3.2
(Q11YS6) RecName: Full=DNA mismatch repair protein mutS;  &CP000...    34   5.4
protein update 2009. 1. 8
PSORT 

 psg: 0.54  gvh: 0.49  alm: 0.09  top: 0.77  tms: 0.13  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SFF129 is end
5' end seq. ID SFF129F
5' end seq. 
>SFF129F.Seq
TGCTATTTAATGAAAAAGTATGTTAAATCTGGAAAAGAGGGAGAATATTTAAGTAACGAT
TCATTAGAAGAAATTAGTGGTATAATTAAGAAAGGTCATTCAGTGTTATATAGAACTGGT
GTTGGTTATTTATCATTAGTATTAGATTCAAATTCAAATCAAAATGGTTTAGTTTCTATA
CACCTTTCACAAGGTTCAATTGAACCATTATCATTTTTAGATTTTTTTAGTAAACCATTA
AATGATGGGAAAACAAATGGAAATCTATCTAGTGGTAGNGGTTTTTATTTTCTAGTTTCA
ACAGATTCAATTGAACCAATTAAATACTATATTAAATTATCATTA----------
Length of 5' end seq. 345
3' end seq. ID SFF129Z
3' end seq. 
>SFF129Z.Seq
----------AATAACAATACTATTAATAATTGTAATATTATTACATTGCTATTTAATGA
AAAAGTATGTTAAATCTGGAAAAGAGGGAGAATATTTAAGTAACGATTCATTAGAAGAAA
TTAGTGGTATAATTAAGAAAGGTCATTCAGTGTTATATAGAACTGGTGTTGGTTATTTAT
CATTAGTATTAGATTCAAATTCAAATCAAAATGGTTTAGTTTCTATACACCTTTCACAAG
GTTCAATTGAACCATTATCATTTTTAGATTTTTTTAGTAAACCATTAAATGATGGGAAAA
CAAATGGAAATCTATCTAGTGGTAGTGGTTTTTATTTTCTAGTTTCAACAGATTCAATTG
AACCAATTAAATACTATATTAAATTATCATTACAATATTCAGATTCTTATGTTTTAAATA
CCTTTTTTAATTGTTGTTTAGTTTTATTATCTTTAATAATTTCAATACTTTTAATTGTAT
TTTTTAATAAGAAATAAATAACCAAAAATATCCTAATNTTTAAGGAATAG
Length of 3' end seq. 520
Connected seq. ID SFF129P
Connected seq. 
>SFF129P.Seq
TGCTATTTAATGAAAAAGTATGTTAAATCTGGAAAAGAGGGAGAATATTTAAGTAACGAT
TCATTAGAAGAAATTAGTGGTATAATTAAGAAAGGTCATTCAGTGTTATATAGAACTGGT
GTTGGTTATTTATCATTAGTATTAGATTCAAATTCAAATCAAAATGGTTTAGTTTCTATA
CACCTTTCACAAGGTTCAATTGAACCATTATCATTTTTAGATTTTTTTAGTAAACCATTA
AATGATGGGAAAACAAATGGAAATCTATCTAGTGGTAGNGGTTTTTATTTTCTAGTTTCA
ACAGATTCAATTGAACCAATTAAATACTATATTAAATTATCATTA----------AATAA
CAATACTATTAATAATTGTAATATTATTACATTGCTATTTAATGAAAAAGTATGTTAAAT
CTGGAAAAGAGGGAGAATATTTAAGTAACGATTCATTAGAAGAAATTAGTGGTATAATTA
AGAAAGGTCATTCAGTGTTATATAGAACTGGTGTTGGTTATTTATCATTAGTATTAGATT
CAAATTCAAATCAAAATGGTTTAGTTTCTATACACCTTTCACAAGGTTCAATTGAACCAT
TATCATTTTTAGATTTTTTTAGTAAACCATTAAATGATGGGAAAACAAATGGAAATCTAT
CTAGTGGTAGTGGTTTTTATTTTCTAGTTTCAACAGATTCAATTGAACCAATTAAATACT
ATATTAAATTATCATTACAATATTCAGATTCTTATGTTTTAAATACCTTTTTTAATTGTT
GTTTAGTTTTATTATCTTTAATAATTTCAATACTTTTAATTGTATTTTTTAATAAGAAAT
AAATAACCAAAAATATCCTAATNTTTAAGGAATAG
Length of connected seq. 865
Full length Seq ID -
Full length Seq. -
Length of full length seq. -