SFF125
Library SF
(Link to library)
Clone ID SFF125
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SFF125P
(Link to Original site)
Representative DNA sequence
>SFF125 (SFF125Q) /CSM/SF/SFF1-B/SFF125Q.Seq.d/
CAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGGTTGTGGTAATATTCAATGTCCA
TGGGGCCACTATTGTGTCAATGAACATGGTAAATGCAGATGTGTACCACACAGACCACCA
CCACGTCCACCAGTTGACCAATGCCGTAATCAACATTGTCCACATGGTTATTCATGTCGT
GTCATTAAAGGTTGTGCCACTTGTGTCAGAGATGCCCGTCCACCACATAACCTTTGTCGT
GGTTTTGGTTGTCCAGAAGGCTCCCATTGTGAAGTTCTTGAAAAACATCCAGTTTGTGTT
AGAAATCATGTTCCACCACACCCACCACCACCACCACAAATTTGCGGTAGTGTAAATTGT
GGTCCAGGTTATATTTGTACAATTATCAATGGTCATCCAACTTGTATTCGTGGTGATGGT
TATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACCAAT
ATCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGNTGTCCACCAGGTTCC
XXXXXXXXXXTCTTGCCAATAATGTATTCCCACAACTTTGTAAAGTTACTCAATGTCCAA
NTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGG
TACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGGCATGTAATCACGTTGGA
ATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCT
CATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCA
ACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACT
GGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCA
TCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCT
TCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCT
CCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAA
AGCTCATCAGCCACTTCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
QGGSACCVPHHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHCPHGYSCR
VIKGCATCVRDARPPHNLCRGFGCPEGSHCEVLEKHPVCVRNHVPPHPPPPPQICGSVNC
GPGYICTIINGHPTCIRGDGYLCNQTRCPHDYQCETISTNIVKCSPKNDECKWHRCPPGS
---

---LANNVFPQLCKVTQCPXDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSGM*srwn
dlysstkqlyqy*ipmlpissnlyssinyccfnhcnncincrnynlcnycrynnwwnynw
wfnf***ccflsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilclk*cs
iiisfkfsciiscklrklrklishf


Translated Amino Acid sequence (All Frames)
Frame A:
QGGSACCVPHHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHCPHGYSCR
VIKGCATCVRDARPPHNLCRGFGCPEGSHCEVLEKHPVCVRNHVPPHPPPPPQICGSVNC
GPGYICTIINGHPTCIRGDGYLCNQTRCPHDYQCETISTNIVKCSPKNDECKWHRCPPGS
---

---scq*cipttl*sysmsx*fll*nd*r*snly*skttgttttllnlcraiirhvitle
*fvfkyqaivpildshvahliqfvfihqllllqplqqlhqlsqlqplqllqvqqlvelql
vvqllivvllpqpivalpphhhqavllqvplqvnhqvaplqvvlhpllqvalhplpqvvl
hhhqlqvqlhhqlqaqkaqkahqpl

Frame B:
kvvvhaayhimtvvvifnvhgativsmnmvnadvyhtdhhhvhqltnavinivhmvihvv
slkvvplvsempvhhitfvvvlvvqkapivkflkniqfvleimfhhthhhhhkfavv*iv
vqvifvqlsmviqlvfvvmviyvikpvvhtiinvkplapis*nvhqrmtnvngixvhqv-
--

---LANNVFPQLCKVTQCPXDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSGM*srwn
dlysstkqlyqy*ipmlpissnlyssinyccfnhcnncincrnynlcnycrynnwwnynw
wfnf***ccflsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilclk*cs
iiisfkfsciiscklrklrklishf

Frame C:
rw*cmlrtts*rlw*ysmsmgpllcq*tw*mqmcttqttttsts*pmp*stlstwlfmsc
h*rlchlcqrcpstt*plswfwlsrrlpl*ss*ktsslc*kscsttptttttnlr*cklw
srlylynyqwssnlysw*wlfm*snplstrlsm*nh*hqyremftke*rm*masxstrf-
--

---lpimyshnfvkllnvqxislvk*leviqlvlkqdhryhhhiaqlvqsyhqacnhvgm
iciqvpsnctntrfpccpshpicihpsttaastiattastvatttsattagtttggtttg
gstsdssaassadssaassspsssaassaassepsssaasssapssasssapssasssap
sssasssaassaassessesssats

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF125 (SFF125Q) /CSM/SF/SFF1-B/SFF125Q.Seq.d/ 1556 0.0
AFI520 (AFI520Q) /CSM/AF/AFI5-A/AFI520Q.Seq.d/ 1191 0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/ 1183 0.0
SLG750 (SLG750Q) /CSM/SL/SLG7-C/SLG750Q.Seq.d/ 1183 0.0
SLE334 (SLE334Q) /CSM/SL/SLE3-B/SLE334Q.Seq.d/ 1183 0.0
SLE302 (SLE302Q) /CSM/SL/SLE3-A/SLE302Q.Seq.d/ 1183 0.0
SLE241 (SLE241Q) /CSM/SL/SLE2-B/SLE241Q.Seq.d/ 1183 0.0
SLC119 (SLC119Q) /CSM/SL/SLC1-A/SLC119Q.Seq.d/ 1183 0.0
SLB706 (SLB706Q) /CSM/SL/SLB7-A/SLB706Q.Seq.d/ 1183 0.0
SLB559 (SLB559Q) /CSM/SL/SLB5-C/SLB559Q.Seq.d/ 1183 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds. 904 0.0 5
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read. 176 4e-40 1
AF279135|AF279135.1 Dictyostelium discoideum spore coat structural protein SP65 (cotE) gene, complete cds. 64 5e-06 1
C26876|C26876.1 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (C50317_1A). 36 0.62 2
AK100095|AK100095.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence. 36 3.7 2
BX284669|BX284669.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-280E18. 44 4.3 1
AC027658|AC027658.1 Oryza sativa subsp. japonica BAC nbxb0006I13, chromosome 10, complete sequence. 44 4.3 1
BU027396|BU027396.1 QHG5F22.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHG5F22, mRNA sequence. 44 4.3 1
AC147507|AC147507.1 Zea mays clone ZMMBBc0304D20, WORKING DRAFT SEQUENCE, 2 ordered pieces. 44 4.3 1
AE017095|AE017095.1 Oryza sativa (japonica cultivar-group) chromosome 10, section 49 of 77 of the complete sequence. 44 4.3 1
dna update 2003.12.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 374 e-102
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 374 e-102
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 72 1e-15
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 74 9e-12
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 70 2e-10
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 63 2e-08
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 57 2e-08
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 59 2e-07
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 47 3e-06
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 44 6e-05
protein update 2009. 5.24
PSORT

psg: 0.86 gvh: 0.28 alm: 0.45 top: 0.50 tms: 0.00 mit: 0.07 mip: 0.14
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SFF125 is nuc

5' end seq. ID SFF125F
5' end seq.
>SFF125F.Seq
CAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGGTTGTGGTAATATTCAATGTCCA
TGGGGCCACTATTGTGTCAATGAACATGGTAAATGCAGATGTGTACCACACAGACCACCA
CCACGTCCACCAGTTGACCAATGCCGTAATCAACATTGTCCACATGGTTATTCATGTCGT
GTCATTAAAGGTTGTGCCACTTGTGTCAGAGATGCCCGTCCACCACATAACCTTTGTCGT
GGTTTTGGTTGTCCAGAAGGCTCCCATTGTGAAGTTCTTGAAAAACATCCAGTTTGTGTT
AGAAATCATGTTCCACCACACCCACCACCACCACCACAAATTTGCGGTAGTGTAAATTGT
GGTCCAGGTTATATTTGTACAATTATCAATGGTCATCCAACTTGTATTCGTGGTGATGGT
TATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACCAAT
ATCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGNTGTCCACCAGGTTCC
----------
Length of 5' end seq. 540
3' end seq. ID SFF125Z
3' end seq.
>SFF125Z.Seq
----------TCTTGCCAATAATGTATTCCCACAACTTTGTAAAGTTACTCAATGTCCAA
NTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGG
TACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGGCATGTAATCACGTTGGA
ATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCT
CATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCA
ACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACT
GGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCA
TCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCT
TCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCT
CCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAA
AGCTCATCAGCCACTTCA
Length of 3' end seq. 608
Connected seq. ID SFF125P
Connected seq.
>SFF125P.Seq
CAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGGTTGTGGTAATATTCAATGTCCA
TGGGGCCACTATTGTGTCAATGAACATGGTAAATGCAGATGTGTACCACACAGACCACCA
CCACGTCCACCAGTTGACCAATGCCGTAATCAACATTGTCCACATGGTTATTCATGTCGT
GTCATTAAAGGTTGTGCCACTTGTGTCAGAGATGCCCGTCCACCACATAACCTTTGTCGT
GGTTTTGGTTGTCCAGAAGGCTCCCATTGTGAAGTTCTTGAAAAACATCCAGTTTGTGTT
AGAAATCATGTTCCACCACACCCACCACCACCACCACAAATTTGCGGTAGTGTAAATTGT
GGTCCAGGTTATATTTGTACAATTATCAATGGTCATCCAACTTGTATTCGTGGTGATGGT
TATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACCAAT
ATCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGNTGTCCACCAGGTTCC
----------TCTTGCCAATAATGTATTCCCACAACTTTGTAAAGTTACTCAATGTCCAA
NTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGG
TACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGGCATGTAATCACGTTGGA
ATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCT
CATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCA
ACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACT
GGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCA
TCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCT
TCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCT
CCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAA
AGCTCATCAGCCACTTCA
Length of connected seq. 1148
Full length Seq ID -
Full length Seq. -
Length of full length seq. -