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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFF112
Library SF
(Link to library)
Clone ID SFF112
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16399-1
Original site URL
Representative seq. ID SFF112P
(Link to Original site)
Representative DNA sequence 
>SFF112 (SFF112Q) /CSM/SF/SFF1-A/SFF112Q.Seq.d/
AAATNCATGTTCAAAATTTTTTTTAAATTACCCGTCCAAACTTCATTAGTGTCAAAATCA
AGATCAATTCAATTTAATTATTCAACAAAAAGTAATATTAGAAATATGGAACAATACTTA
CCACAAGCTAAGGAATTTATTTCATTTATTGATAAATCACCATCACCATATCATGCAGTT
CAATACTTTTCAGAGATTTTAAAGAGTAAAGGTTTCATTCATTTATCAGAGAAACAAATG
TGGGATATTCAACCAAATAAAAAATATTTCTTTACTCGTAATCAATCATGTATTTCTGCT
TTTGCAGTTGGTGGTAAATATAAACCAGGTAATGGTTTTAATATTGCAGCAGCACATACT
GATAGTCCAAATTTTAAAGTTAGACCAGTATCAAAAGTTGAATCAGTTGGATATCAACAA
GTTGGTGTTGAAACATATGGTGGTGGATTGTGGTATACATGGTTTGATCGTGATTTAACC
GTTGCAGGTAGAGTCATTGTTAAATCAGGTGATGGTAGTTATGAGAGTAAATTAGTTCAC
ATAAAGAAACCAATTCTTAGAATTCCATCATTAGCAATTCATCTCGATCGTTCAGTAAAC
ACTGATGGATTTAAATATAATACTCAAAATCATTTAGTACCXXXXXXXXXXGCGATACTC
AACCAGCTGCAATCGGTGGTGCACTTGATGAATTCATTTTCTCACCACGTTGTGATAATT
TGGGTATGTCATATTGCGCAATGATTGGTTTATTGAATGTCAAAGAATCAACATTGGCAC
AAGAGGAGAATGTATTGAATGTGATATTATTCGATAATGAAGAGGTTGGCTCAAGTTCAC
CACAAGGTGCATGTGCACCATTGATCAATGATACCATTAGTCGTGTCAATAGCTCAATGT
TTGCATCCACTTGTAAACCACATGAATTAAACAATTTCATTGATTTAACTTTAAGAAATA
GTTTCTTAATCTCTGCTGATATGGCACATGCTATTCATCCAAATTACACAGCAAATCATG
AACCACTTCATAGACCAGCTCTTAATAAAGGTCCAGTAATCAAATATAATGCAAATTTAC
GTTATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATATCTGTAAAAAGAATGGTA
TCCCAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTGGTTCAACAATTGGTCCAA
TCATTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGTAATCCACAATTATCAATGC
ATTCAATTCGTGAAACTTGTGGTGTTGCNGATATCACTCATGGTATTAATTTATTCAAAA
ATATTTTAACAATTTACAAAATTAGATATTATTAATCNATTAGAAAAAAATAAAAAAAAA
NAAAAAATAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KXMFKIFFKLPVQTSLVSKSRSIQFNYSTKSNIRNMEQYLPQAKEFISFIDKSPSPYHAV
QYFSEILKSKGFIHLSEKQMWDIQPNKKYFFTRNQSCISAFAVGGKYKPGNGFNIAAAHT
DSPNFKVRPVSKVESVGYQQVGVETYGGGLWYTWFDRDLTVAGRVIVKSGDGSYESKLVH
IKKPILRIPSLAIHLDRSVNTDGFKYNTQNHLV---

---DTQPAAIGGALDEFIFSPRCDNLGMSYCAMIGLLNVKESTLAQEENVLNVILFDNEE
VGSSSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSFLISADMAHAIHPN
YTANHEPLHRPALNKGPVIKYNANLRYASNGPTSFVILDICKKNGIPIQEFLVKNDSPCG
STIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITHGINLFKNILTIYKIRYY*sir
kk*kkxknkk
Translated Amino Acid sequence (All Frames) 
Frame A:
KXMFKIFFKLPVQTSLVSKSRSIQFNYSTKSNIRNMEQYLPQAKEFISFIDKSPSPYHAV
QYFSEILKSKGFIHLSEKQMWDIQPNKKYFFTRNQSCISAFAVGGKYKPGNGFNIAAAHT
DSPNFKVRPVSKVESVGYQQVGVETYGGGLWYTWFDRDLTVAGRVIVKSGDGSYESKLVH
IKKPILRIPSLAIHLDRSVNTDGFKYNTQNHLV---

---ailnqlqsvvhlmnsfshhvviiwvchiaq*lvy*msknqhwhkrrmy*m*yysimk
rlaqvhhkvhvhh*smiplvvsiaqclhplvnhmn*tisli*l*eivs*slliwhmlfiq
itqqimnhfidqllikvq*snimqiyvmlqmvqlvllswisvkrmvsqfknssskmihhv
vqqlvqsflvlmvlel*ilvihnyqciqfvklvvlxislmvliyskif*qftkldiinxl
eknkkkxkikk

Frame B:
nxcskfflnypsklh*cqnqdqfnliiqqkvileiwnntyhklrnlfhllinhhhhimqf
ntfqrf*rvkvsfiyqrnkcgifnqiknisllvinhvflllqlvvninqvmvlilqqhil
ivqilkldqyqklnqldinklvlkhmvvdcgihglivi*plqvesllnqvmvvmrvn*ft
*rnqflefhh*qfisivq*tlmdlniilkii*y---

---rystscnrwct**ihflttl**fgyvilrndwfiecqrinigtrgeciecdiir**r
gwlkfttrcmctidq*yh*scq*lnvcihl*tt*ikqfh*fnfkk*flnlc*ygtcyssk
lhsks*tts*tss**rssnqi*ckftlcfkwsn*fcylgyl*kewypnsriprqk*ftmw
fnnwsnhfwylwy*ncryw*stiinafns*nlwccxyhswy*fiqkyfnnlqn*illix*
kkikkxkk*k

Frame C:
xhvqnff*itrpnfisvkikinsi*lfnkk*y*kygtiltts*giyfiy**ititiscss
ilfrdfke*rfhsfiretnvgystk*kiflys*simyfcfcsww*i*tr*wf*ycssty*
*skf*s*tsiks*iswistswc*niwwwivvymv*s*fnrcr*shc*ir*w*l*e*issh
ketns*nsiisnssrsfskh*wi*i*ysksfst---

---DTQPAAIGGALDEFIFSPRCDNLGMSYCAMIGLLNVKESTLAQEENVLNVILFDNEE
VGSSSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSFLISADMAHAIHPN
YTANHEPLHRPALNKGPVIKYNANLRYASNGPTSFVILDICKKNGIPIQEFLVKNDSPCG
STIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITHGINLFKNILTIYKIRYY*sir
kk*kkxknkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF112 (SFF112Q) /CSM/SF/SFF1-A/SFF112Q.Seq.d/                       2470   0.0
VFH686 (VFH686Q) /CSM/VF/VFH6-D/VFH686Q.Seq.d/                       1287   0.0
SSC761 (SSC761Q) /CSM/SS/SSC7-C/SSC761Q.Seq.d/                       1287   0.0
SFL484 (SFL484Q) /CSM/SF/SFL4-D/SFL484Q.Seq.d/                       1287   0.0
SFI601 (SFI601Q) /CSM/SF/SFI6-A/SFI601Q.Seq.d/                       1287   0.0
SFD324 (SFD324Q) /CSM/SF/SFD3-A/SFD324Q.Seq.d/                       1287   0.0
SFC625 (SFC625Q) /CSM/SF/SFC6-B/SFC625Q.Seq.d/                       1287   0.0
SFB870 (SFB870Q) /CSM/SF/SFB8-C/SFB870Q.Seq.d/                       1287   0.0
CHD160 (CHD160Q) /CSM/CH/CHD1-C/CHD160Q.Seq.d/                       1287   0.0
AFM822 (AFM822Q) /CSM/AF/AFM8-A/AFM822Q.Seq.d/                       1287   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY133535|AY133535.1 Arabidopsis thaliana At5g60160/f15l12_20 mRNA, complete cds.    72   5e-15  3
AY085075|AY085075.1 Arabidopsis thaliana clone 126533 mRNA, complete sequence.    72   6e-15  3
AY045584|AY045584.1 Arabidopsis thaliana AT5g60160/f15l12_20 mRNA, complete cds.    72   7e-15  3
AB026632|AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12.    72   1e-11  5
CB259770|CB259770.1 23-E011176-013-009-M05-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA clone MPIZp770M059Q 5-PRIME, mRNA sequence.    72   2e-09  2
AV823138|AV823138.1 Arabidopsis thaliana cDNA clone:RAFL05-15-M22, 5'-end.    72   3e-09  2
BG525546|BG525546.1 51-5 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    72   2e-08  1
CA248374|CA248374.1 SCCCFL5096F07.g Saccharum officinarum FL5 Saccharum officinarum cDNA clone SCCCFL5096F07 5', mRNA sequence.    70   9e-08  1
CA523816|CA523816.1 KS12029A03 KS12 Capsicum annuum cDNA, mRNA sequence.    66   1e-06  1
BJ260180|BJ260180.1 Triticum aestivum cDNA clone:whh23n14, 5' end, single read.    66   1e-06  1
dna update 2003.12.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M70) RecName: Full=Aspartyl aminopeptidase;          EC=3.4....   450   e-125
AC159446_25(AC159446|pid:none) Trypanosoma brucei chromosome 3 c...   231   e-102
AM746676_4408(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   175   9e-87
CP000113_2316(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   181   1e-86
(Q3KFM3) RecName: Full=Probable M18-family aminopeptidase 2;    ...   169   2e-76
CP000450_1313(CP000450|pid:none) Nitrosomonas eutropha C91, comp...   156   1e-75
(Q48L80) RecName: Full=Probable M18-family aminopeptidase 2;    ...   163   2e-75
(Q97LF4) RecName: Full=Probable M18 family aminopeptidase 2;    ...   153   3e-74
CP000749_2853(CP000749|pid:none) Marinomonas sp. MWYL1, complete...   154   3e-74
(A5W7K3) RecName: Full=Probable M18-family aminopeptidase 2;    ...   161   3e-74
protein update 2009. 5.24
PSORT 

 psg: 0.84  gvh: 0.53  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.53  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for SFF112 is nuc
5' end seq. ID SFF112F
5' end seq. 
>SFF112F.Seq
AAATNCATGTTCAAAATTTTTTTTAAATTACCCGTCCAAACTTCATTAGTGTCAAAATCA
AGATCAATTCAATTTAATTATTCAACAAAAAGTAATATTAGAAATATGGAACAATACTTA
CCACAAGCTAAGGAATTTATTTCATTTATTGATAAATCACCATCACCATATCATGCAGTT
CAATACTTTTCAGAGATTTTAAAGAGTAAAGGTTTCATTCATTTATCAGAGAAACAAATG
TGGGATATTCAACCAAATAAAAAATATTTCTTTACTCGTAATCAATCATGTATTTCTGCT
TTTGCAGTTGGTGGTAAATATAAACCAGGTAATGGTTTTAATATTGCAGCAGCACATACT
GATAGTCCAAATTTTAAAGTTAGACCAGTATCAAAAGTTGAATCAGTTGGATATCAACAA
GTTGGTGTTGAAACATATGGTGGTGGATTGTGGTATACATGGTTTGATCGTGATTTAACC
GTTGCAGGTAGAGTCATTGTTAAATCAGGTGATGGTAGTTATGAGAGTAAATTAGTTCAC
ATAAAGAAACCAATTCTTAGAATTCCATCATTAGCAATTCATCTCGATCGTTCAGTAAAC
ACTGATGGATTTAAATATAATACTCAAAATCATTTAGTACC----------
Length of 5' end seq. 641
3' end seq. ID SFF112Z
3' end seq. 
>SFF112Z.Seq
----------GCGATACTCAACCAGCTGCAATCGGTGGTGCACTTGATGAATTCATTTTC
TCACCACGTTGTGATAATTTGGGTATGTCATATTGCGCAATGATTGGTTTATTGAATGTC
AAAGAATCAACATTGGCACAAGAGGAGAATGTATTGAATGTGATATTATTCGATAATGAA
GAGGTTGGCTCAAGTTCACCACAAGGTGCATGTGCACCATTGATCAATGATACCATTAGT
CGTGTCAATAGCTCAATGTTTGCATCCACTTGTAAACCACATGAATTAAACAATTTCATT
GATTTAACTTTAAGAAATAGTTTCTTAATCTCTGCTGATATGGCACATGCTATTCATCCA
AATTACACAGCAAATCATGAACCACTTCATAGACCAGCTCTTAATAAAGGTCCAGTAATC
AAATATAATGCAAATTTACGTTATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGAT
ATCTGTAAAAAGAATGGTATCCCAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGT
GGTTCAACAATTGGTCCAATCATTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGT
AATCCACAATTATCAATGCATTCAATTCGTGAAACTTGTGGTGTTGCNGATATCACTCAT
GGTATTAATTTATTCAAAAATATTTTAACAATTTACAAAATTAGATATTATTAATCNATT
AGAAAAAAATAAAAAAAAANAAAAAATAAAAAAA
Length of 3' end seq. 744
Connected seq. ID SFF112P
Connected seq. 
>SFF112P.Seq
AAATNCATGTTCAAAATTTTTTTTAAATTACCCGTCCAAACTTCATTAGTGTCAAAATCA
AGATCAATTCAATTTAATTATTCAACAAAAAGTAATATTAGAAATATGGAACAATACTTA
CCACAAGCTAAGGAATTTATTTCATTTATTGATAAATCACCATCACCATATCATGCAGTT
CAATACTTTTCAGAGATTTTAAAGAGTAAAGGTTTCATTCATTTATCAGAGAAACAAATG
TGGGATATTCAACCAAATAAAAAATATTTCTTTACTCGTAATCAATCATGTATTTCTGCT
TTTGCAGTTGGTGGTAAATATAAACCAGGTAATGGTTTTAATATTGCAGCAGCACATACT
GATAGTCCAAATTTTAAAGTTAGACCAGTATCAAAAGTTGAATCAGTTGGATATCAACAA
GTTGGTGTTGAAACATATGGTGGTGGATTGTGGTATACATGGTTTGATCGTGATTTAACC
GTTGCAGGTAGAGTCATTGTTAAATCAGGTGATGGTAGTTATGAGAGTAAATTAGTTCAC
ATAAAGAAACCAATTCTTAGAATTCCATCATTAGCAATTCATCTCGATCGTTCAGTAAAC
ACTGATGGATTTAAATATAATACTCAAAATCATTTAGTACC----------GCGATACTC
AACCAGCTGCAATCGGTGGTGCACTTGATGAATTCATTTTCTCACCACGTTGTGATAATT
TGGGTATGTCATATTGCGCAATGATTGGTTTATTGAATGTCAAAGAATCAACATTGGCAC
AAGAGGAGAATGTATTGAATGTGATATTATTCGATAATGAAGAGGTTGGCTCAAGTTCAC
CACAAGGTGCATGTGCACCATTGATCAATGATACCATTAGTCGTGTCAATAGCTCAATGT
TTGCATCCACTTGTAAACCACATGAATTAAACAATTTCATTGATTTAACTTTAAGAAATA
GTTTCTTAATCTCTGCTGATATGGCACATGCTATTCATCCAAATTACACAGCAAATCATG
AACCACTTCATAGACCAGCTCTTAATAAAGGTCCAGTAATCAAATATAATGCAAATTTAC
GTTATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATATCTGTAAAAAGAATGGTA
TCCCAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTGGTTCAACAATTGGTCCAA
TCATTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGTAATCCACAATTATCAATGC
ATTCAATTCGTGAAACTTGTGGTGTTGCNGATATCACTCATGGTATTAATTTATTCAAAA
ATATTTTAACAATTTACAAAATTAGATATTATTAATCNATTAGAAAAAAATAAAAAAAAA
NAAAAAATAAAAAAA
Length of connected seq. 1385
Full length Seq ID -
Full length Seq. -
Length of full length seq. -