>SFE881 (SFE881Q) /CSM/SF/SFE8-D/SFE881Q.Seq.d/
XXXXXXXXXXATCCAGCCACTGGAAAATGTTCAAACTTACCAGTGGTTTGTGAGATTAAA
GATGCTTGTAACAAACCACAATGTGATATGGTCACTGGTAAATGCATTGTCACCGATAAT
TGTAATGACAATAACATATGCAGTGACGATAGTTGCTCATTGGATGGCACATGTATTCAC
ACTAAAAAGAATTGTGATGATGGAAATAAATGTACAAATGATTTTTGTAAAGTTGATATT
GGCTGCGTTCATAGTAATATCACTTGTGAATCAAGTTCAGTTTGTATGGTTGCAAGTTGT
GATTCGAATAAAGGTTGTATTGAATCACCAATAGTCTGTCCATCAAGTGCATTTTGTTTA
GTGGCTCAATGTGATGTAGGTTATGGTGGTTGTAATCAATATGATAAAGTTTGTATACCT
GATGATCCTCATTGTCAATATGGTATTTGTGATAACTCAACTAAAAAATGTACATTTAAA
GATTTCGATCCACTTCCATTCAGATGTCAATCTGTGGCTGTAAAAGCAGGTGTTATTGGT
GGTGCTGCAATTGCTGGTGTAGTTGTTGGTGGTGCCGTTGCACTTGGTTTAGCTTTATTT
GGTGCTAAAG

---PATGKCSNLPVVCEIKDACNKPQCDMVTGKCIVTDNCNDNNICSDDSCSLDGTCIHT
KKNCDDGNKCTNDFCKVDIGCVHSNITCESSSVCMVASCDSNKGCIESPIVCPSSAFCLV
AQCDVGYGGCNQYDKVCIPDDPHCQYGICDNSTKKCTFKDFDPLPFRCQSVAVKAGVIGG
AAIAGVVVGGAVALGLALFGAK

Frame A:
---sshwkmfkltsgl*d*rcl*qttm*yghw*mhchr*l**q*hmq*r*lligwhmysh
*kel**wk*myk*fl*s*ywlrs**yhl*ikfslygckl*fe*rly*itnslsikcilfs
gsm*crlwwl*si**slyt**sslsiwyl**ln*kmyi*rfrstsiqmsicgcksrcyww
ccncwcscwwcrctwfsfiwc*


Frame B:
---PATGKCSNLPVVCEIKDACNKPQCDMVTGKCIVTDNCNDNNICSDDSCSLDGTCIHT
KKNCDDGNKCTNDFCKVDIGCVHSNITCESSSVCMVASCDSNKGCIESPIVCPSSAFCLV
AQCDVGYGGCNQYDKVCIPDDPHCQYGICDNSTKKCTFKDFDPLPFRCQSVAVKAGVIGG
AAIAGVVVGGAVALGLALFGAK


Frame C:
---qplenvqtyqwfvrlkmlvtnhnviwslvnalspiivmtityavtivahwmahvftl
krivmmeinvqmifvklilaafivislvnqvqfvwlqvvirikvvlnhq*svhqvhfv*w
lnvm*vmvvvinmikfvylmilivnmvfvitqlknvhlkisihfhsdvnlwl*kqvllvv
lqllv*llvvplhlv*lylvlk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE881 (SFE881Q) /CSM/SF/SFE8-D/SFE881Q.Seq.d/                       1189   0.0
CFH486 (CFH486Q) /CSM/CF/CFH4-D/CFH486Q.Seq.d/                       1189   0.0
CFH274 (CFH274Q) /CSM/CF/CFH2-D/CFH274Q.Seq.d/                       1189   0.0
CFJ814 (CFJ814Q) /CSM/CF/CFJ8-A/CFJ814Q.Seq.d/                       1136   0.0
CFH643 (CFH643Q) /CSM/CF/CFH6-B/CFH643Q.Seq.d/                       1057   0.0
CHA328 (CHA328Q) /CSM/CH/CHA3-B/CHA328Q.Seq.d/                       1023   0.0
CHG601 (CHG601Q) /CSM/CH/CHG6-A/CHG601Q.Seq.d/                        989   0.0
CHP202 (CHP202Q) /CSM/CH/CHP2-A/CHP202Q.Seq.d/                        896   0.0
CHH575 (CHH575Q) /CSM/CH/CHH5-D/CHH575Q.Seq.d/                        874   0.0
CHH879 (CHH879Q) /CSM/CH/CHH8-D/CHH879Q.Seq.d/                        781   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z46933|Z46933.1 Caenorhabditis elegans cosmid F34H10.              42   0.003  2
BX119907|BX119907.8 Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6.    44   0.007  4
CE345121|CE345121.1 tigr-gss-dog-17000334123182 Dog Library Canis familiaris genomic, genomic survey sequence.    40   0.063  2
AL791679|AL791679.2 Xenopus tropicalis EST, clone TNeu097b14 5'.    30   0.13   3
AC073968|AC073968.8 Homo sapiens BAC clone RP11-111G20 from 7, complete sequence.    40   0.15   4
BQ507132|BQ507132.2 EST614547 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGO57 3' end, mRNA sequence.    42   0.17   2
BG597119|BG597119.1 EST495797 cSTS Solanum tuberosum cDNA clone cSTS16L8 5' sequence, mRNA sequence.    42   0.19   2
BQ507131|BQ507131.1 EST614546 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGO57 5' end, mRNA sequence.    42   0.19   2
AC125824|AC125824.2 Rattus norvegicus clone CH230-482K24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44   0.65   2
AE003555|AE003555.3 Drosophila melanogaster chromosome 3L, section 30 of 83 of the complete sequence.    36   0.75   5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                338   7e-92
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                164   1e-39
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   115   9e-25
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   100   2e-20
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                100   5e-20
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    99   9e-20
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    98   2e-19
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    97   4e-19
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    90   4e-17
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    88   2e-16

 psg: 0.83  gvh: 0.28  alm: 0.22  top: 0.60  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SFE881 is cyt

>SFE881Z.Seq
----------ATCCAGCCACTGGAAAATGTTCAAACTTACCAGTGGTTTGTGAGATTAAA
GATGCTTGTAACAAACCACAATGTGATATGGTCACTGGTAAATGCATTGTCACCGATAAT
TGTAATGACAATAACATATGCAGTGACGATAGTTGCTCATTGGATGGCACATGTATTCAC
ACTAAAAAGAATTGTGATGATGGAAATAAATGTACAAATGATTTTTGTAAAGTTGATATT
GGCTGCGTTCATAGTAATATCACTTGTGAATCAAGTTCAGTTTGTATGGTTGCAAGTTGT
GATTCGAATAAAGGTTGTATTGAATCACCAATAGTCTGTCCATCAAGTGCATTTTGTTTA
GTGGCTCAATGTGATGTAGGTTATGGTGGTTGTAATCAATATGATAAAGTTTGTATACCT
GATGATCCTCATTGTCAATATGGTATTTGTGATAACTCAACTAAAAAATGTACATTTAAA
GATTTCGATCCACTTCCATTCAGATGTCAATCTGTGGCTGTAAAAGCAGGTGTTATTGGT
GGTGCTGCAATTGCTGGTGTAGTTGTTGGTGGTGCCGTTGCACTTGGTTTAGCTTTATTT
GGTGCTAAAG