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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFE858
Library SF
(Link to library)
Clone ID SFE858
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SFE858P
(Link to Original site)
Representative DNA sequence 
>SFE858 (SFE858Q) /CSM/SF/SFE8-C/SFE858Q.Seq.d/
AAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAA
ATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXXXTGATTC
TTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAGACCATTGG
TACCACTGGTGATACATTGGCTCATACATTCCCTGGTACAGATTCAGTCGGTGTAACTGG
TTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCA
ACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAA
GAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAAT
GAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAAT
GCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATT
AATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGA
GAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGA
ACAATATGAACTTTTATTAGATCAACTCTATGATAAACTTGCAAAAGAACAAAAAGAAAA
AGAAGAAAAAGAAGAAAAAGAAGAAAAAGAGAAACAAGAAAAAGAAGAAAAAGAAAGAAA
AGATAAAGAATTAGCAGCAGCAGCAGCAGCAGCAGAAACAGAAAAACTNNAAAAAGAACG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---DSYTSIGKIASGNGNSLSETIGTTGDTLAHTFPGTDSVGVTGFHIITKTFNLIAGGK
FNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRN
TLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNL
QEDQEQYELLLDQLYDKLAKEQKEKEEKEEKEEKEKQEKEEKERKDKELAAAAAAAETEK
LXKE
Translated Amino Acid sequence (All Frames) 
Frame A:
kftik*lfflfflfkv*iieiikinikkker*kk---

---*flyinw*nciw*w*fp**dhwyhw*yigsyipwyrfsrcnwfpynykdf*fdcww*
i*l*stih**ilrfnsitr**rn*keitkcsstitrtitcnlsinei*rskkfr**sns*
ys*gnanst*ksrywstksrr*rtin*ftk*rtwfiqkstrs*treksqstrinql*ief
trrsrti*tfirstl**tckrtkrkrrkrrkrrkretrkrrkrkkr*risssssssrnrk
txkrt

Frame B:
nllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---DSYTSIGKIASGNGNSLSETIGTTGDTLAHTFPGTDSVGVTGFHIITKTFNLIAGGK
FNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRN
TLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNL
QEDQEQYELLLDQLYDKLAKEQKEKEEKEEKEEKEKQEKEEKERKDKELAAAAAAAETEK
LXKE

Frame C:
iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---ilihqlvklhlvmviplvrplvplvihwlihslvqiqsv*lvsi*lqrlli*llvvn
ltlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvi
llrkckfnvkikilvnkikkiknn*liykienlvytkinkilnkrkepinkn*simn*iy
kkiknnmnfy*insminlqknkkkkkkkkkkkkkrnkkkkkkkekikn*qqqqqqqkqkn
xkkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE858 (SFE858Q) /CSM/SF/SFE8-C/SFE858Q.Seq.d/                       1166   0.0
SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/                       1142   0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/                       1142   0.0
AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/                       1142   0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/                       1134   0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/                       1128   0.0
SFB370 (SFB370Q) /CSM/SF/SFB3-C/SFB370Q.Seq.d/                       1110   0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/                       1094   0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/                       1076   0.0
CHC546 (CHC546Q) /CSM/CH/CHC5-B/CHC546Q.Seq.d/                       1051   0.0
own update 2002.11.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.  1142   0.0    2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   4e-06  14
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   4e-06  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.002  16
AC121530|AC121530.6 Mus musculus clone RP24-376O15, WORKING DRAFT SEQUENCE, 8 unordered pieces.    36   0.022  8
AC115845|AC115845.5 Mus musculus clone RP24-243F8, WORKING DRAFT SEQUENCE, 4 ordered pieces.    34   0.041  9
AC016899|AC016899.4 Homo sapiens chromosome 12 clone RP11-127B1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    32   0.066  7
AC137828|AC137828.15 Medicago truncatula clone mth2-6c16, WORKING DRAFT SEQUENCE, 15 unordered pieces.    40   0.19   7
BM881131|BM881131.1 rb06d01.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q17494 Q17494 B0393.5 PROTEIN. [1] ;, mRNA sequence.    48   0.20   1
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    30   0.25   15
dna update 2003.12.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   337   2e-91
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    50   1e-04
CP001279_131(CP001279|pid:none) Nautilia profundicola AmH, compl...    48   3e-04
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    47   6e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    47   0.001
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    46   0.001
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    45   0.002
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    45   0.002
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    45   0.003
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ...    45   0.003
protein update 2009. 5.24
PSORT 

 psg: 0.63  gvh: 0.42  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SFE858 is nuc
5' end seq. ID SFE858F
5' end seq. 
>SFE858F.Seq
AAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAA
ATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA----------
Length of 5' end seq. 104
3' end seq. ID SFE858Z
3' end seq. 
>SFE858Z.Seq
----------TGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCC
TTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCCCTGGTACAGATT
CAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTA
AATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATA
ATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTG
CAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTA
ATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAG
AAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAAC
AAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATT
TACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATAAACTTGCAA
AAGAACAAAAAGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAAAAGAGAAACAAGAAAAAG
AAGAAAAAGAAAGAAAAGATAAAGAATTAGCAGCAGCAGCAGCAGCAGCAGAAACAGAAA
AACTNNAAAAAGAACG
Length of 3' end seq. 726
Connected seq. ID SFE858P
Connected seq. 
>SFE858P.Seq
AAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAA
ATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA----------TGATTC
TTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAGACCATTGG
TACCACTGGTGATACATTGGCTCATACATTCCCTGGTACAGATTCAGTCGGTGTAACTGG
TTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCA
ACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAA
GAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAAT
GAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAAT
GCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATT
AATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGA
GAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGA
ACAATATGAACTTTTATTAGATCAACTCTATGATAAACTTGCAAAAGAACAAAAAGAAAA
AGAAGAAAAAGAAGAAAAAGAAGAAAAAGAGAAACAAGAAAAAGAAGAAAAAGAAAGAAA
AGATAAAGAATTAGCAGCAGCAGCAGCAGCAGCAGAAACAGAAAAACTNNAAAAAGAACG
Length of connected seq. 830
Full length Seq ID -
Full length Seq. -
Length of full length seq. -