NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFE842
Library SF
(Link to library)
Clone ID SFE842
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15036-1
Original site URL
Representative seq. ID SFE842P
(Link to Original site)
Representative DNA sequence 
>SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/
CACTGTTGGCCTACTGGTAGAATTGTATCAGCACATAGAACACCTGATAGATTATTTGAA
TATGCAAAAACAGCAAAGAGTAGAGGATTAAAAATTGTGATTGCAGGTGCTGGTGGTGCT
GCTCATTTACCTGGCATGGTTGCTGCATTAACTCCATTGCCTGTATTTGGTGTACCAGTG
CAATCCAAAGCATTGAGTGGTGTTGATAGTTTATTATCAATCGTTCAAATGCCTGCTGGT
ATTCCTGTTGGTACTGTTGCGATTGGTGCTGCTGGTGCTACAAATGCTGCTTTATTATCT
GCTGCTGTTTTGGCTCCTTATTACCCTTCAATCGAGTTAAGTTTAGATTTATATAGAAAG
AAACAAACTGATGCAGTTGCTGAAATACCTGTTGATAATCCAACATCAACATCAACTACT
ACTACTACTACAACTACATCAAATGCAACATCAATTTTATCAGCAATTCATACTTCAACA
ATTAATAGTAATACATCATCACATAATAATAATCAACAACAGCAACAACXXXXXXXXXXT
CAAGTTAAATTAACCGATCAAGTCGATCTTGAACAAGCTTGGAAAAAGGTTACCTCTGAA
ACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCAGAAGCATCAGTT
ATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACCAATAAACAT
CGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAAA
CAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCC
GTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGAA
TTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTCTCAA
TTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAA
CGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCTT
TTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCAT
ATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAAGGGTCATGTACCAACAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
HCWPTGRIVSAHRTPDRLFEYAKTAKSRGLKIVIAGAGGAAHLPGMVAALTPLPVFGVPV
QSKALSGVDSLLSIVQMPAGIPVGTVAIGAAGATNAALLSAAVLAPYYPSIELSLDLYRK
KQTDAVAEIPVDNPTSTSTTTTTTTTSNATSILSAIHTSTINSNTSSHNNNQQQQQ---

---QVKLTDQVDLEQAWKKVTSETCATKAILEQYIEFESEASVIVARALDGTELTFPLVT
NKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVGIIAVELFVVKNNETGQYSLM
VNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCGLPLGSVDFTKRISEAEFIQQQIPPIVM
TNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEGRKRVMYQQ
Translated Amino Acid sequence (All Frames) 
Frame A:
HCWPTGRIVSAHRTPDRLFEYAKTAKSRGLKIVIAGAGGAAHLPGMVAALTPLPVFGVPV
QSKALSGVDSLLSIVQMPAGIPVGTVAIGAAGATNAALLSAAVLAPYYPSIELSLDLYRK
KQTDAVAEIPVDNPTSTSTTTTTTTTSNATSILSAIHTSTINSNTSSHNNNQQQQQ---

---ss*inrssrs*tslekgyl*nlcnqsnt*tiyrv*irsisycstcfrwnrvnlpigy
q*ts*syftsnhctssiariys*tsq*nwfkdcsfqwfgwyycrriicsekq*nrsilfn
gk*igtkttq*wsldhrrlcnlsi*tidslclwfafgfsrfh*tyk*s*iysttnstncn
dksfrsrs*rlgkntsn*rftssylc*r*ckrrs*kghvpt

Frame B:
tvgllvelyqhiehlidylnmqkqqrved*kl*lqvlvvlliylawllh*lhclylvyqc
npkh*vvlivyyqsfkcllvfllvllrlvllvlqmllyylllfwllitlqss*v*iyier
nklmqllkylliiqhqhqlllllqlhqmqhqfyqqfilqqlivihhhiiiinnsnn---

---QVKLTDQVDLEQAWKKVTSETCATKAILEQYIEFESEASVIVARALDGTELTFPLVT
NKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVGIIAVELFVVKNNETGQYSLM
VNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCGLPLGSVDFTKRISEAEFIQQQIPPIVM
TNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEGRKRVMYQQ

Frame C:
llayw*ncist*nt**ii*icknske*rikncdcrcwwccsftwhgccinsiaciwctsa
iqsiewc**fiinrsnacwyscwyccdwccwcykccfiicccfgsllpfnrvkfrfi*ke
tn*csc*ntc**snininyyyyynyikcninfisnsyfnn***yiit***sttat---

---kln*piksilnklgkrlplklvqpkqylnni*slnqkhqll*hvl*meqs*pshwlp
iniviifyvkplhqlncqnifinkpmklv*rllvpmvwlvllpsnyl**ktmkqvntl*w
*mnwhqdhtivvigpskvv*plnlnn*fvvfvvclwvqsislnv*vklnlfnnkfhql**
qif*vkkltvgkkyfklkvhifismlkvmqkkvvkgsctn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                       1441   0.0
VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/                       1263   0.0
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                       1257   0.0
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                       1257   0.0
SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                       1245   0.0
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                       1243   0.0
VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/                       1223   0.0
SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                       1205   0.0
VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                       1174   0.0
CHS229 (CHS229Q) /CSM/CH/CHS2-B/CHS229Q.Seq.d/                       1070   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U23210|U23210.1 Debaryomyces occidentalis phosphoribosylaminoimidazole carboxylase (ADE2) gene, complete cds.    62   1e-09  4
BT008606|BT008606.1 Arabidopsis thaliana clone U50031 putative phosphoribosylaminoimidazole carboxylase (At2g37690) mRNA, complete cds.    76   1e-09  1
BT005770|0    76   1e-09  1
AX507898|AX507898.1 Sequence 2593 from Patent WO0216655.           76   1e-09  1
AB034950|AB034950.1 Candida boidinii ADE2 gene for phosphoribosyl-5-aminoimidazole carboxylase, complete cds.    56   3e-07  3
AF349948|AF349948.1 Nicotiana tabacum phosphoribosylaminoimidazole carboxylase (AIRC) mRNA, partial cds.    66   1e-06  1
AY429422|AY429422.1 Nicotiana tabacum phosphoribosylaminoimidazole carboxylase (purEK) mRNA, partial cds.    66   1e-06  1
BD298417|BD298417.1 Promoter and terminator of Pichia methanolica glyceryl aldehyde-3-phosphoric acid dehydrogenase 2.    56   1e-06  3
I87876|I87876.1 Sequence 1 from patent US 5716808.                 56   1e-06  3
BD280193|BD280193.1 Pichia methanolica glycerylaldehyde-3-phosphate dehydrogenase 1 promoter and terminator.    56   1e-06  3
dna update 2003.12.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050060_1(AM050060|pid:none) Azospirillum brasilense partial pu...   170   8e-41
CP000943_2544(CP000943|pid:none) Methylobacterium sp. 4-46, comp...   159   1e-37
CU234118_1139(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   157   7e-37
CP000699_3106(CP000699|pid:none) Sphingomonas wittichii RW1, com...   157   7e-37
AP009384_2414(AP009384|pid:none) Azorhizobium caulinodans ORS 57...   157   7e-37
CP000774_2062(CP000774|pid:none) Parvibaculum lavamentivorans DS...   156   2e-36
AL009126_674(AL009126|pid:none) Bacillus subtilis subsp. subtili...   155   3e-36
AP006627_1021(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...   152   3e-35
CP000463_4055(CP000463|pid:none) Rhodopseudomonas palustris BisA...   151   4e-35
CP000319_1161(CP000319|pid:none) Nitrobacter hamburgensis X14, c...   151   5e-35
protein update 2009. 5.24
PSORT 

 psg: 0.69  gvh: 0.63  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SFE842 is nuc
5' end seq. ID SFE842F
5' end seq. 
>SFE842F.Seq
CACTGTTGGCCTACTGGTAGAATTGTATCAGCACATAGAACACCTGATAGATTATTTGAA
TATGCAAAAACAGCAAAGAGTAGAGGATTAAAAATTGTGATTGCAGGTGCTGGTGGTGCT
GCTCATTTACCTGGCATGGTTGCTGCATTAACTCCATTGCCTGTATTTGGTGTACCAGTG
CAATCCAAAGCATTGAGTGGTGTTGATAGTTTATTATCAATCGTTCAAATGCCTGCTGGT
ATTCCTGTTGGTACTGTTGCGATTGGTGCTGCTGGTGCTACAAATGCTGCTTTATTATCT
GCTGCTGTTTTGGCTCCTTATTACCCTTCAATCGAGTTAAGTTTAGATTTATATAGAAAG
AAACAAACTGATGCAGTTGCTGAAATACCTGTTGATAATCCAACATCAACATCAACTACT
ACTACTACTACAACTACATCAAATGCAACATCAATTTTATCAGCAATTCATACTTCAACA
ATTAATAGTAATACATCATCACATAATAATAATCAACAACAGCAACAAC----------
Length of 5' end seq. 529
3' end seq. ID SFE842Z
3' end seq. 
>SFE842Z.Seq
----------TCAAGTTAAATTAACCGATCAAGTCGATCTTGAACAAGCTTGGAAAAAGG
TTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCAG
AAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTA
CCAATAAACATCGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAAT
ATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTG
GTATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTAA
TGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGTG
TAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCG
ATTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCACCAATTGTAA
TGACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTT
CACATCTTCATATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAAGGGTCATGTACC
AACAA
Length of 3' end seq. 655
Connected seq. ID SFE842P
Connected seq. 
>SFE842P.Seq
CACTGTTGGCCTACTGGTAGAATTGTATCAGCACATAGAACACCTGATAGATTATTTGAA
TATGCAAAAACAGCAAAGAGTAGAGGATTAAAAATTGTGATTGCAGGTGCTGGTGGTGCT
GCTCATTTACCTGGCATGGTTGCTGCATTAACTCCATTGCCTGTATTTGGTGTACCAGTG
CAATCCAAAGCATTGAGTGGTGTTGATAGTTTATTATCAATCGTTCAAATGCCTGCTGGT
ATTCCTGTTGGTACTGTTGCGATTGGTGCTGCTGGTGCTACAAATGCTGCTTTATTATCT
GCTGCTGTTTTGGCTCCTTATTACCCTTCAATCGAGTTAAGTTTAGATTTATATAGAAAG
AAACAAACTGATGCAGTTGCTGAAATACCTGTTGATAATCCAACATCAACATCAACTACT
ACTACTACTACAACTACATCAAATGCAACATCAATTTTATCAGCAATTCATACTTCAACA
ATTAATAGTAATACATCATCACATAATAATAATCAACAACAGCAACAAC----------T
CAAGTTAAATTAACCGATCAAGTCGATCTTGAACAAGCTTGGAAAAAGGTTACCTCTGAA
ACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCAGAAGCATCAGTT
ATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACCAATAAACAT
CGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAAA
CAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCC
GTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGAA
TTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTCTCAA
TTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAA
CGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCTT
TTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCAT
ATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAAGGGTCATGTACCAACAA
Length of connected seq. 1184
Full length Seq ID -
Full length Seq. -
Length of full length seq. -