SFE768
Library SF
(Link to library)
Clone ID SFE768
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID SFE768Z
(Link to Original site)
Representative DNA sequence
>SFE768 (SFE768Q) /CSM/SF/SFE7-C/SFE768Q.Seq.d/
XXXXXXXXXXTGAAACCATCGCCAAAGGTGGTGAACCAGCTTGGAAAGTTTCCATTCAAT
TGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTT
GGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAG
AGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCGGGTA
TTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATC
GTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGG
GTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAG
GTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAAC
ATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACT
TTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCT
CTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTT
CAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTNGGTATTG
ATGTTAANATGTCATCAAATTCGCTGCTAGATCAAACT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---ETIAKGGEPAWKVSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPE
NYFAEVEQAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKG
GVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDF
VQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGID
VXMSSNSLLDQT


Translated Amino Acid sequence (All Frames)
Frame A:
---ETIAKGGEPAWKVSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPE
NYFAEVEQAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKG
GVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDF
VQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGID
VXMSSNSLLDQT


Frame B:
---kpspkvvnqlgkfpfn*wnlkmp*sivsihsm*qrfghtktih*fklvvwf*iviqr
itllklnklpshhptwfrvlnhhqircykvvssliqiliviv*v*tinksqsivhsp*rv
vlkttnvmvswlsmvmvvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttl
fnqviyidsclkmpnlvssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrvxvlm
lxchqirc*ik


Frame C:
---nhrqrw*tslesfhsidgi*rclkvsfqsircnkdlvtqrlsinsnwsygfes*sre
llc*s*tsclltiphgsgy*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgw
c*klpt*wfhgcqw*ww*rsklstklfrwsratsricst*i*rlwfrcsstiqssk*rlc
str*fi*thv*rcqisfrl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*gsxy*c
*xvikfaarsn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFE768 (SFE768Q) /CSM/SF/SFE7-C/SFE768Q.Seq.d/ 1471 0.0
CFI568 (CFI568Q) /CSM/CF/CFI5-C/CFI568Q.Seq.d/ 1459 0.0
CFI634 (CFI634Q) /CSM/CF/CFI6-B/CFI634Q.Seq.d/ 1455 0.0
FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/ 1449 0.0
AFI254 (AFI254Q) /CSM/AF/AFI2-C/AFI254Q.Seq.d/ 1443 0.0
AFG841 (AFG841Q) /CSM/AF/AFG8-B/AFG841Q.Seq.d/ 1441 0.0
AFE580 (AFE580Q) /CSM/AF/AFE5-D/AFE580Q.Seq.d/ 1433 0.0
AFE376 (AFE376Q) /CSM/AF/AFE3-D/AFE376Q.Seq.d/ 1431 0.0
AFE574 (AFE574Q) /CSM/AF/AFE5-D/AFE574Q.Seq.d/ 1421 0.0
AFE294 (AFE294Q) /CSM/AF/AFE2-D/AFE294Q.Seq.d/ 1413 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1407 0.0 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1407 0.0 2
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 1e-16 2
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 1e-16 2
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 74 2e-14 2
CC133697|CC133697.1 NDL.83G19.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.83G19, DNA sequence. 46 6e-14 6
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 86 8e-13 1
BX554266|BX554266.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse14d06_q1c. 74 3e-09 1
BX564920|BX564920.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse74e09_q1c. 74 3e-09 1
BX554380|BX554380.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse15b01_q1c. 74 3e-09 1
dna update 2003.12.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 501 e-140
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 291 1e-77
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 291 1e-77
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 282 7e-75
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 280 4e-74
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 274 2e-72
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili... 274 2e-72
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 274 2e-72
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 270 3e-71
(Q9PWF7) RecName: Full=Catalase; EC=1.11.1.6; &AB03187... 263 4e-69
protein update 2009. 5.24
PSORT

psg: 0.75 gvh: 0.23 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SFE768 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFE768Z
3' end seq.
>SFE768Z.Seq
----------TGAAACCATCGCCAAAGGTGGTGAACCAGCTTGGAAAGTTTCCATTCAAT
TGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTT
GGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAG
AGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCGGGTA
TTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATC
GTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGG
GTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAG
GTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAAC
ATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACT
TTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCT
CTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTT
CAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTNGGTATTG
ATGTTAANATGTCATCAAATTCGCTGCTAGATCAAACT
Length of 3' end seq. 748
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -