NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFI206
Library AF
(Link to library)
Clone ID AFI206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFI206Z
(Link to Original site)
Representative DNA sequence 
>AFI206 (AFI206Q) /CSM/AF/AFI2-A/AFI206Q.Seq.d/
XXXXXXXXXXCCAGATAACACCTACAAAGTACTCGTCGATANCAAAGAGATCCAAGCAGG
TAACCTCGCTGATGATTGGGAATTACTTCCATCAAAACAAATCAAAGATCCAAAACAATC
CAAACCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAAACCAGC
CGGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTG
GAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGG
TGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCATT
AATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGC
TATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCAC
CGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGC
CGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGA
CGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGA
AGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAA
ATCAACCAAAAAAGTTGATCATGACGAACTTTAAANAAATAAATAAATAATAAAAAAAAA
sequence update 2001. 6. 2
Translated Amino Acid sequence 
---DNTYKVLVDXKEIQAGNLADDWELLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPAG
HDDIPASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLI
DNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVANQEAE
KKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDKKEEVKKS
TKKVDHDEL*xnk*iikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---qitptkyssixkrskqvtslmignyfhqnkskiqnnpnqsiglt*rksmtqkmlnqp
vmtisqlqsliqklsnqrigmkkttvngkpqpspiqntkvngkqrksqiqntkvngyth*
litqntlktmnstslmisvlsvsnygklnlvpslti*ssptlskklkislkrpllptkkp
krkclttskppklkrerkltkn*lpkkllkkkpkklmkkkkkslkki*lklmtkkkkskn
qpkklimtnfkxink**kk


Frame B:
---r*hlqstrrxqrdpsr*pr**lgitsiktnqrsktiqtsrlg*rkgnr*prrc*tsr
s*rypsfnr*srscqtrgle*rrrr*mgspnhrqsriqr*meskenpksriqr*mgtpin
**prir*rq*tlpl**srcyrfrimas*iwfhl*qydrhrlcrrs*rfl*kdlccqprsr
kenv*rprsrqs*rekes*rkiscrksc*krsrrs**rrrrsr*rrfs*n**qkrrsqki
nqks*s*rtlxk*innkkk


Frame C:
---DNTYKVLVDXKEIQAGNLADDWELLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPAG
HDDIPASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLI
DNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVANQEAE
KKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDKKEEVKKS
TKKVDHDEL*xnk*iikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE283 (VFE283Q) /CSM/VF/VFE2-D/VFE283Q.Seq.d/                       1116   0.0
SFH171 (SFH171Q) /CSM/SF/SFH1-C/SFH171Q.Seq.d/                       1116   0.0
AFO794 (AFO794Q) /CSM/AF/AFO7-D/AFO794Q.Seq.d/                       1116   0.0
AFO349 (AFO349Q) /CSM/AF/AFO3-C/AFO349Q.Seq.d/                       1116   0.0
AFN528 (AFN528Q) /CSM/AF/AFN5-B/AFN528Q.Seq.d/                       1116   0.0
AFN383 (AFN383Q) /CSM/AF/AFN3-D/AFN383Q.Seq.d/                       1116   0.0
AFK286 (AFK286Q) /CSM/AF/AFK2-D/AFK286Q.Seq.d/                       1116   0.0
AFI574 (AFI574Q) /CSM/AF/AFI5-D/AFI574Q.Seq.d/                       1116   0.0
AFI206 (AFI206Q) /CSM/AF/AFI2-A/AFI206Q.Seq.d/                       1116   0.0
AFH852 (AFH852Q) /CSM/AF/AFH8-C/AFH852Q.Seq.d/                       1116   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds.  1108   0.0    3
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    80   2e-15  3
AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    80   6e-11  1
BE435540|BE435540.1 EST406618 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG27F24, mRNA sequence.    74   4e-09  1
AI771812|AI771812.1 EST252912 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED38E1, mRNA sequence.    74   4e-09  1
AW626316|AW626316.1 EST320223 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ19K24 5', mRNA sequence.    74   4e-09  1
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence.    74   4e-09  1
BE459798|BE459798.1 EST415090 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM8G13, mRNA sequence.    74   4e-09  1
AI782264|AI782264.1 EST263143 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES18L5, mRNA sequence.    74   4e-09  1
AI489195|AI489195.1 EST247534 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED17D1, mRNA sequence.    74   4e-09  1
dna update 2004. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ...   347   2e-94
(Q9STD3) RecName: Full=Calreticulin; Flags: Precursor;  &AJ00076...   224   2e-57
(Q9XF98) RecName: Full=Calreticulin; Flags: Precursor;  &AF13473...   214   2e-54
AF283816_1(AF283816|pid:none) Pinus taeda calreticulin mRNA, com...   211   2e-53
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr...   209   6e-53
AM445600_2(AM445600|pid:none) Vitis vinifera contig VV78X277184....   209   6e-53
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ...   208   1e-52
AC149080_5(AC149080|pid:none) Medicago truncatula clone mth2-75j...   208   2e-52
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN...   208   2e-52
(Q40401) RecName: Full=Calreticulin; Flags: Precursor;  &T16968(...   207   3e-52
protein update 2009. 4.22
PSORT 

 psg: 0.68  gvh: 0.26  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.06  erl: 1.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AFI206 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFI206Z
3' end seq. 
>AFI206Z.Seq
----------CCAGATAACACCTACAAAGTACTCGTCGATANCAAAGAGATCCAAGCAGG
TAACCTCGCTGATGATTGGGAATTACTTCCATCAAAACAAATCAAAGATCCAAAACAATC
CAAACCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAAACCAGC
CGGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTG
GAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGG
TGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCATT
AATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGC
TATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCAC
CGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGC
CGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGA
CGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGA
AGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAA
ATCAACCAAAAAAGTTGATCATGACGAACTTTAAANAAATAAATAAATAATAAAAAAAAA
Length of 3' end seq. 770
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -