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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFI202
Library AF
(Link to library)
Clone ID AFI202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13857-1
Original site URL
Representative seq. ID AFI202P
(Link to Original site)
Representative DNA sequence 
>AFI202 (AFI202Q) /CSM/AF/AFI2-A/AFI202Q.Seq.d/
TTATTAATATAATTAAAAGAATATGGATAAAATGGAATCAGCAACATCAGAAACCACCTT
AACATATTCATCAGAACATACAAAAAGTTCAGAAATAATATCAGAAGCAAGTAGTAAAGA
TAGTCGTGATAATATTAAAATTAGAAGTAGCTTTATATCATCATCTTTATTTTTTATAAA
AATATCAATATGGTTTTTTGGATATAGTGTGGGTCAAGGTGCAACAGCANCNTTTGCAAT
TCCATATCAAGTTTCAATATTAAGACCAGAAGATAAAACATATTGNAANGGTATATTACC
AATTAGTGGAATGTTTATAAATTTATTGATTACACCAATATTNGGATATATTAGNGATCA
TACAAAAACACCATTNGGAAGAAGAAGACCATATCTATNGGNNGGAACGANGATNNNGAN
NATNTNNNNATGNNNAGAGGCNNCATNNGANCNNCCNTNNNNNNNNNNNGNNGGXXXXXX
XXXXTANCAANGNGTTGATTGGGCNTTGGCCCTTCATTCATTACCAAANAAAACCNTTGG
CAAAAANATGGGNATTTGGCANATNTCTTTTATCGCNCCNACTGNAGNTGNTCCANCT
sequence update 2001. 6. 2
Translated Amino Acid sequence 
y*yn*KNMDKMESATSETTLTYSSEHTKSSEIISEASSKDSRDNIKIRSSFISSSLFFIK
ISIWFFGYSVGQGATAXFAIPYQVSILRPEDKTYXXGILPISGMFINLLITPIXGYIXDH
TKTPXGRRRPYLXXGTXXXXXXXXXEAXXXXPXXXXX---

---XQXVDWALALHSLPXKTXGKXMGIWXXSFIAPTXXXPX
Translated Amino Acid sequence (All Frames) 
Frame A:
lli*lkeyg*ngisnirnhlnifirtykkfrnnirsk**r*s**y*n*k*lyiiififyk
ninmvfwi*cgsrcnsxxcnsissfniktrr*nilxxyitn*wnvykfidytnixiy*xs
ykntixkkktisxgxnxdxxxxxmxrgxxxxxxxxxxx---

---XQXVDWALALHSLPXKTXGKXMGIWXXSFIAPTXXXPX

Frame B:
y*yn*KNMDKMESATSETTLTYSSEHTKSSEIISEASSKDSRDNIKIRSSFISSSLFFIK
ISIWFFGYSVGQGATAXFAIPYQVSILRPEDKTYXXGILPISGMFINLLITPIXGYIXDH
TKTPXGRRRPYLXXGTXXXXXXXXXEAXXXXPXXXXX---

---xxxligxwpfihyqxkplakxwxfgxxllsxxlxxxx

Frame C:
iniikriwikwnqqhqkpp*hihqniqkvqk*yqkqvvkivviilklevalyhhlyfl*k
yqygfldivwvkvqqxxlqfhikfqy*dqkikhixxvyyqlvecl*iy*lhqyxdilxii
qkhhxeeedhiyxxerxxxxxxxxxrxhxxxxxxxxx---

---xxx*lgxgpsfitkxnxwqkxgxlaxxfyrxxxxxsx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFI202 (AFI202Q) /CSM/AF/AFI2-A/AFI202Q.Seq.d/                        755   0.0
SSM658 (SSM658Q) /CSM/SS/SSM6-C/SSM658Q.Seq.d/                        575   e-163
AFG890 (AFG890Q) /CSM/AF/AFG8-D/AFG890Q.Seq.d/                        525   e-148
SFH516 (SFH516Q) /CSM/SF/SFH5-A/SFH516Q.Seq.d/                        480   e-134
SFK429 (SFK429Q) /CSM/SF/SFK4-B/SFK429Q.Seq.d/                        383   e-105
SFK377 (SFK377Q) /CSM/SF/SFK3-D/SFK377Q.Seq.d/                        377   e-103
AFH507 (AFH507Q) /CSM/AF/AFH5-A/AFH507Q.Seq.d/                        365   e-100
AFM487 (AFM487Q) /CSM/AF/AFM4-D/AFM487Q.Seq.d/                        339   3e-92
SLH171 (SLH171Q) /CSM/SL/SLH1-C/SLH171Q.Seq.d/                        301   6e-81
AFF845 (AFF845Q) /CSM/AF/AFF8-B/AFF845Q.Seq.d/                        266   4e-70
own update 2009. 4. 3
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

A59852|A59852.1 Sequence 1 from Patent EP0764724.                 40  0.012  3
AR075166|AR075166.1 Sequence 1 from patent US 5955332.            40  0.012  3
X97651|X97651.1 L.lactis abiH gene.                               40  0.012  3
BX294186|BX294186.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-170O10.    38  0.049  4
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    32  0.11  9
AQ842547|AQ842547.1 CpG1127B CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence.    48  0.12  1
AQ450516|AQ450516.1 500012F08.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomic, genomic survey sequence.    48  0.12  1
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          44  0.18  7
BX276102|BX276102.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-268M12.    38  0.22  5
BM650792|BM650792.1 17000687372555 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449637519 5', mRNA sequence.    34  0.34  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM711867_115(AM711867|pid:none) Clavibacter michiganensis subsp....    49   8e-05
CP000750_2517(CP000750|pid:none) Kineococcus radiotolerans SRS30...    46   8e-04
CP000750_2511(CP000750|pid:none) Kineococcus radiotolerans SRS30...    43   0.005
CR378670_209(CR378670|pid:none) Photobacterium profundum SS9; se...    42   0.016
CP000828_1111(CP000828|pid:none) Acaryochloris marina MBIC11017,...    40   0.035
AM039952_2798(AM039952|pid:none) Xanthomonas campestris pv. vesi...    40   0.061
CP000507_1651(CP000507|pid:none) Shewanella amazonensis SB2B, co...    40   0.061
CP000629_2136(CP000629|pid:none) Agrobacterium radiobacter K84 c...    39   0.10
CP000083_3623(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    39   0.10
CP000961_4319(CP000961|pid:none) Shewanella woodyi ATCC 51908, c...    39   0.10
protein update 2009. 4.11
PSORT 

 psg: 0.76  gvh: 0.37  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for AFI202 is nuc
5' end seq. ID AFI202F
5' end seq. 
>AFI202F.Seq
TTATTAATATAATTAAAAGAATATGGATAAAATGGAATCAGCAACATCAGAAACCACCTT
AACATATTCATCAGAACATACAAAAAGTTCAGAAATAATATCAGAAGCAAGTAGTAAAGA
TAGTCGTGATAATATTAAAATTAGAAGTAGCTTTATATCATCATCTTTATTTTTTATAAA
AATATCAATATGGTTTTTTGGATATAGTGTGGGTCAAGGTGCAACAGCANCNTTTGCAAT
TCCATATCAAGTTTCAATATTAAGACCAGAAGATAAAACATATTGNAANGGTATATTACC
AATTAGTGGAATGTTTATAAATTTATTGATTACACCAATATTNGGATATATTAGNGATCA
TACAAAAACACCATTNGGAAGAAGAAGACCATATCTATNGGNNGGAACGANGATNNNGAN
NATNTNNNNATGNNNAGAGGCNNCATNNGANCNNCCNTNNNNNNNNNNNGNNGG------
----
Length of 5' end seq. 474
3' end seq. ID AFI202Z
3' end seq. 
>AFI202Z.Seq
----------TANCAANGNGTTGATTGGGCNTTGGCCCTTCATTCATTACCAAANAAAAC
CNTTGGCAAAAANATGGGNATTTGGCANATNTCTTTTATCGCNCCNACTGNAGNTGNTCC
ANCT
Length of 3' end seq. 114
Connected seq. ID AFI202P
Connected seq. 
>AFI202P.Seq
TTATTAATATAATTAAAAGAATATGGATAAAATGGAATCAGCAACATCAGAAACCACCTT
AACATATTCATCAGAACATACAAAAAGTTCAGAAATAATATCAGAAGCAAGTAGTAAAGA
TAGTCGTGATAATATTAAAATTAGAAGTAGCTTTATATCATCATCTTTATTTTTTATAAA
AATATCAATATGGTTTTTTGGATATAGTGTGGGTCAAGGTGCAACAGCANCNTTTGCAAT
TCCATATCAAGTTTCAATATTAAGACCAGAAGATAAAACATATTGNAANGGTATATTACC
AATTAGTGGAATGTTTATAAATTTATTGATTACACCAATATTNGGATATATTAGNGATCA
TACAAAAACACCATTNGGAAGAAGAAGACCATATCTATNGGNNGGAACGANGATNNNGAN
NATNTNNNNATGNNNAGAGGCNNCATNNGANCNNCCNTNNNNNNNNNNNGNNGG------
----TANCAANGNGTTGATTGGGCNTTGGCCCTTCATTCATTACCAAANAAAACCNTTGG
CAAAAANATGGGNATTTGGCANATNTCTTTTATCGCNCCNACTGNAGNTGNTCCANCT
Length of connected seq. 588
Full length Seq ID -
Full length Seq. -
Length of full length seq. -