AFI195 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFI195
Library	AF (Link to library)
Clone ID	AFI195 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16373-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFI1-D/AFI195Q.Seq.d/
Representative seq. ID	AFI195P (Link to Original site)
Representative DNA sequence	>AFI195 (AFI195Q) /CSM/AF/AFI1-D/AFI195Q.Seq.d/ ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA GGTGGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAAT TGAAAATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTACAATTCATACATTTAT TACATTTGGTGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTTTCAAAACATGTTGN TCATCATTCAACTTTTCCTCAAGATAAAATCATTTTCAATGTTGGNATTGNAATACCATC AAAATGGXXXXXXXXXXGATCAAACTGATTTAGCTTTATTAGAAATTATTGATTATGATT CAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTA AAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAA AACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATG AAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATT ATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTA ATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTT TATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGG TTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTT TAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGT CTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATT ATTGTATACCAACTTCAACAATTTTAACTGGATAGTCAAGTTTCAAAAAAGAATTCAATC AA
sequence update	2001. 6. 2
Translated Amino Acid sequence	lmqkiiiskkkikigqlktqkngsmnlkkedqirmwifqdlngmvnnyhyfqcqifk echlmelhyteiyihnlkyfkhKKTKVYQVVVVEVVVVEVGSYLNSINIGNIDLNDDLI ENEIINRTVLIRVGTIHTFITFGAGCRIGKNLILVSKHVXHHSTFPQDKIIFNVGIXIPS KW--- ---DQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQ HDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIE PIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLEC NSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTG*ssfkkefnq
Translated Amino Acid sequence (All Frames)	Frame A: inakmnynfkkkdlkdwsiedtkewinefkkrgpnlenvdfsrfewdgeqlslfsmsdfq rmspygvalyrnlysqpkifqtlkknksisssgggggssggglfkyywyfkfn knyqdsfnswynsyiyyiwcwlnwklnigfktcxssfnfssrnhfqcwxxnti km--- ---DQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQ HDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIE PIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLEC NSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTGssfkkefnq Frame B: lmqkiiiskkkikigqlktqkngsmnlkkedqirmwifqdlngmvnnyhyfqcqifk echlmelhyteiyihnlkyfkhKKTKVYQVVVVEVVVVEVGSYLNSINIGNIDLNDDLI ENEIINRTVLIRVGTIHTFITFGAGCRIGKNLILVSKHVXHHSTFPQDKIIFNVGIXIPS KW--- ---iklilykllimiqfiiiliiivlvvvvvlivknqkvvvvvvnmitnikiknnn mmkkimkqvvvvtimmmkiiktilivvnlhhhhliiiimnkrkernkimksfviln qlnslakmkdywvkilfyvvfqrnvliyhyvknrrliqfihplkreqyhflminvnv tlyqnqvtlnphsfqslmqnllvwshniliqiniivyqlqqfldsqvskknsi Frame C: cknelfqkkrfkrlvnrhkrmdqikkrtkfrecgffkimgwtiiiifnvrfsk nvtlwsctiqkfifttnisnikkkqkyikwwwrwwrwvviivlilvilimmil kmklltgqflelvqfihllhlvlvvelvktywfqnmlxiiqlflkiksfsmlxlxyhq n--- ---snfsfirnylfnssfkf*ywy**rinkkwwwiqikskttt krskwq*kfkkpyck**iyitiilssfrirkgkretrlnhlyt nihwpkriigryyfmwfskgtyfitmsrikdkgyslsihkgnsiif**tfrm lctrtrllilinlfkvckiywfgkvtiydskillytnfnnfnwivkfqkriqs
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFI195 (AFI195Q) /CSM/AF/AFI1-D/AFI195Q.Seq.d/ 2276 0.0 CFF509 (CFF509Q) /CSM/CF/CFF5-A/CFF509Q.Seq.d/ 1398 0.0 SFL166 (SFL166Q) /CSM/SF/SFL1-C/SFL166Q.Seq.d/ 1374 0.0 SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/ 1370 0.0 CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/ 1370 0.0 AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/ 1370 0.0 AFE138 (AFE138Q) /CSM/AF/AFE1-B/AFE138Q.Seq.d/ 1370 0.0 AFK472 (AFK472Q) /CSM/AF/AFK4-C/AFK472Q.Seq.d/ 1366 0.0 CFI603 (CFI603Q) /CSM/CF/CFI6-A/CFI603Q.Seq.d/ 1364 0.0 SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/ 1362 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 5e-24 27 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 9e-21 29 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 50 3e-18 27 AC116963\|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 42 2e-17 22 AL031745\|AL031745.8 Plasmodium falciparum DNA from MAL1P2. 48 1e-15 21 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 48 1e-15 25 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 42 1e-14 26 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 40 1e-14 20 AC115592\|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 44 1e-14 18 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 40 2e-14 27
dna update	2004. 6.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116305_101(AC116305\|pid:none) Dictyostelium discoideum chromos... 40 0.22 AB299373_1(AB299373\|pid:none) Ciona intestinalis Ci-Elf mRNA for... 36 3.1 AM086846_1(AM086846\|pid:none) Senna atomaria chloroplast partial... 35 4.1 AM086900_1(AM086900\|pid:none) Senna spectabilis chloroplast part... 35 4.1 BT020861_1(BT020861\|pid:none) Bos taurus ets variant gene 6 (TEL... 35 4.1 (P41212) RecName: Full=Transcription factor ETV6; AltName: Full=... 35 5.3 DQ841178_1(DQ841178\|pid:none) Homo sapiens B-cell lineage specif... 35 5.3 (Q0VC65) RecName: Full=Transcription factor ETV6; &BC120331_1(B... 35 5.3 Z35761_1(Z35761\|pid:none) Homo sapiens TEL/ABL fusion protien. 35 5.3 (P97360) RecName: Full=Transcription factor ETV6; AltName: Full=... 35 7.0
protein update	2009. 4.22
PSORT	psg: 0.75 gvh: 0.32 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 44.0 %: cytoplasmic 4.0 %: mitochondrial 4.0 %: vesicles of secretory system >> prediction for AFI195 is nuc
5' end seq. ID	AFI195F
5' end seq.	>AFI195F.Seq ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA GGTGGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAAT TGAAAATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTACAATTCATACATTTAT TACATTTGGTGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTTTCAAAACATGTTGN TCATCATTCAACTTTTCCTCAAGATAAAATCATTTTCAATGTTGGNATTGNAATACCATC AAAATGG----------
Length of 5' end seq.	547
3' end seq. ID	AFI195Z
3' end seq.	>AFI195Z.Seq ----------GATCAAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCA TCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATC AATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACA ACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTT AAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCA TTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGA ACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGG TTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATAC AGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATG TAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGC AAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTAT ACCAACTTCAACAATTTTAACTGGATAGTCAAGTTTCAAAAAAGAATTCAATCAA
Length of 3' end seq.	705
Connected seq. ID	AFI195P
Connected seq.	>AFI195P.Seq ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA GGTGGGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAAT TGAAAATGAAATTATTAACAGGACAGTTTTAATTAGAGTTGGTACAATTCATACATTTAT TACATTTGGTGCTGGTTGTAGAATTGGTAAAAACTTAATATTGGTTTCAAAACATGTTGN TCATCATTCAACTTTTCCTCAAGATAAAATCATTTTCAATGTTGGNATTGNAATACCATC AAAATGG----------GATCAAACTGATTTAGCTTTATTAGAAATTATTGATTATGATT CAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTA AAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAA AACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATG AAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATT ATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTA ATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTT TATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGG TTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTT TAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGT CTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATT ATTGTATACCAACTTCAACAATTTTAACTGGATAGTCAAGTTTCAAAAAAGAATTCAATC AA
Length of connected seq.	1252
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas