>SFE493 (SFE493Q) /CSM/SF/SFE4-D/SFE493Q.Seq.d/
AGAAACAAGATCACCAGTAAAATTAATTGGATCAACTTCATTTATGTATATTAAAGTTGG
TAATATTTATATTGTTGGTGTATCAAGACAAAATGTTAATGCATGTATGGTATTCGAAGT
ATTACACCAATTGGTTGACATTTTTAAATCATATTTCGATAATTTAGATGAAGATTCAAT
TAGAAATAATTTTGTTTTAGTTTATGAGTTATTAGATGAAATTTTAGATTTTGGTTACCC
ACAAAATTGTTCAACAGATGTATTAAAACTTTATATTACTCAAGGTCAAGGAAAATTAAA
ATCACTTGATAAATTAAAACAAGATAAAATTTCAAAGATTACAATTCAAGCAACAGGTAC
AACACCATGGAGAACACCAGATATTAAATATAAGAGAAATGAACTTTATATTGATGTTGT
GGAGAGTGTAAATTTGTTAATGTCAGCAGAAGGTAATATATTAAGAGCAGATGTATCAGG
ACAGGTTATGATGAAATGTTTCCTTTCTGGTATGCCAGAATGTAAATTTGGTATGAATGA
TAAGGTTATTATGGATAGAGAGAAAXXXXXXXXXX

ETRSPVKLIGSTSFMYIKVGNIYIVGVSRQNVNACMVFEVLHQLVDIFKSYFDNLDEDSI
RNNFVLVYELLDEILDFGYPQNCSTDVLKLYITQGQGKLKSLDKLKQDKISKITIQATGT
TPWRTPDIKYKRNELYIDVVESVNLLMSAEGNILRADVSGQVMMKCFLSGMPECKFGMND
KVIMDRE---

Frame A:
rnkitskinwinfiyvy*sw*ylycwciktkc*cmygirsitpig*hf*iifr*fr*rfn
*k*fcfsl*vir*nfrfwlptklfnrciktlyysrsrkikit**iktr*nfkdynssnry
ntmentry*i*ek*tly*ccgeckfvnvsrr*yiksrcirtgydemfpfwyarm*iwye*
*gyyg*re---


Frame B:
ETRSPVKLIGSTSFMYIKVGNIYIVGVSRQNVNACMVFEVLHQLVDIFKSYFDNLDEDSI
RNNFVLVYELLDEILDFGYPQNCSTDVLKLYITQGQGKLKSLDKLKQDKISKITIQATGT
TPWRTPDIKYKRNELYIDVVESVNLLMSAEGNILRADVSGQVMMKCFLSGMPECKFGMND
KVIMDRE---


Frame C:
kqdhq*n*ldqlhlcilklvifillvyqdkmlmhvwyskyytnwltflnhisii*mkiql
eiilf*fmsy*mkf*ilvthkivqqmy*nfillkvken*nhlin*nkikfqrlqfkqqvq
hhgehqilniremnfilmlwrv*ic*cqqkviy*eqmyqdrl**nvsflvcqnvnlv*mi
rllwier---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE493 (SFE493Q) /CSM/SF/SFE4-D/SFE493Q.Seq.d/                       1120   0.0
AFK120 (AFK120Q) /CSM/AF/AFK1-A/AFK120Q.Seq.d/                        938   0.0
AFN610 (AFN610Q) /CSM/AF/AFN6-A/AFN610Q.Seq.d/                        595   e-169
AFM148 (AFM148Q) /CSM/AF/AFM1-B/AFM148Q.Seq.d/                        565   e-160
AFN325 (AFN325Q) /CSM/AF/AFN3-B/AFN325Q.Seq.d/                        545   e-154
FC-AB28 (FC-AB28Q) /CSM/FC/FC-AB/FC-AB28Q.Seq.d/                      529   e-149
SSA265 (SSA265Q) /CSM/SS/SSA2-C/SSA265Q.Seq.d/                        462   e-129
SFJ890 (SFJ890Q) /CSM/SF/SFJ8-D/SFJ890Q.Seq.d/                        458   e-128
AFM745 (AFM745Q) /CSM/AF/AFM7-B/AFM745Q.Seq.d/                        456   e-127
SFL260 (SFL260Q) /CSM/SF/SFL2-C/SFL260Q.Seq.d/                        452   e-126

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U44890|U44890.1 Dictyostelium discoideum adaptin complex medium chain subunit (DdApm1) mRNA, complete cds.  1104   0.0    1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   500   0.0    10
BQ860765|BQ860765.1 QGC16K01.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC16K01, mRNA sequence.    54   3e-09  3
BQ862793|BQ862793.1 QGC22B11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC22B11, mRNA sequence.    54   3e-09  3
BQ864368|BQ864368.1 QGC26H21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC26H21, mRNA sequence.    54   3e-09  3
BQ861698|BQ861698.1 QGC19F15.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC19F15, mRNA sequence.    54   3e-09  3
BW191896|BW191896.1 Ciona intestinalis cDNA, clone:ciad095b21, 5' end, single read.    40   1e-06  3
AL139075|AL139075.2 Campylobacter jejuni NCTC11168 complete genome; segment 2/6.    36   4e-05  12
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   1e-04  11
BJ556428|BJ556428.1 Ipomoea nil cDNA clone:jm1d20, 5' end, single read.    58   1e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_67(AC116977|pid:none) Dictyostelium discoideum chromoso...   332   4e-90
(P54672) RecName: Full=AP-2 complex subunit mu; AltName: Full=Mu...   332   4e-90
AE017342_187(AE017342|pid:none) Cryptococcus neoformans var. neo...   215   8e-55
AM270053_79(AM270053|pid:none) Aspergillus niger contig An03c012...   214   2e-54
AP007164_612(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...   213   3e-54
BX294009_23(BX294009|pid:none) Neurospora crassa DNA linkage gro...   212   6e-54
AY849627_1(AY849627|pid:none) Magnaporthe grisea clathrin coat a...   211   1e-53
CU633446_84(CU633446|pid:none) Podospora anserina genomic DNA ch...   210   2e-53
(Q7ZW98) RecName: Full=AP-2 complex subunit mu-1-A; AltName: Ful...   204   2e-51
BT045307_1(BT045307|pid:none) Salmo salar clone ssal-rgf-518-033...   202   4e-51

 psg: 0.92  gvh: 0.44  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.06
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SFE493 is cyt

>SFE493F.Seq
AGAAACAAGATCACCAGTAAAATTAATTGGATCAACTTCATTTATGTATATTAAAGTTGG
TAATATTTATATTGTTGGTGTATCAAGACAAAATGTTAATGCATGTATGGTATTCGAAGT
ATTACACCAATTGGTTGACATTTTTAAATCATATTTCGATAATTTAGATGAAGATTCAAT
TAGAAATAATTTTGTTTTAGTTTATGAGTTATTAGATGAAATTTTAGATTTTGGTTACCC
ACAAAATTGTTCAACAGATGTATTAAAACTTTATATTACTCAAGGTCAAGGAAAATTAAA
ATCACTTGATAAATTAAAACAAGATAAAATTTCAAAGATTACAATTCAAGCAACAGGTAC
AACACCATGGAGAACACCAGATATTAAATATAAGAGAAATGAACTTTATATTGATGTTGT
GGAGAGTGTAAATTTGTTAATGTCAGCAGAAGGTAATATATTAAGAGCAGATGTATCAGG
ACAGGTTATGATGAAATGTTTCCTTTCTGGTATGCCAGAATGTAAATTTGGTATGAATGA
TAAGGTTATTATGGATAGAGAGAAA----------