SFE484
Library SF
(Link to library)
Clone ID SFE484
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SFE484P
(Link to Original site)
Representative DNA sequence
>SFE484 (SFE484Q) /CSM/SF/SFE4-D/SFE484Q.Seq.d/
CACTGTTGGCCTACTGGAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAA
AAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAA
AAAAACCAAAAAAAAAAXXXXXXXXXXATGATGTCGAATGTCCANATTTCCATANATGTG
TTTAAANACGTGGNGGNATCTTAAGNTGNGAATTTNATCCNCCAAGACAACCAAGATCCC
TTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGNGACTATGATGATG
ATGAANATGATGGTGATTATGATGGCCGNGACGGTGACTATGATGGTGATTATGATGGTG
ATTATGATGATGACAATTATT
sequence update 2001. 6. 1
Translated Amino Acid sequence
tvglleyfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKTKKK---

---MMSNVXISIXVFKXVXXS*xxnxixqdnqdpliglkmkmmivtmmixtmmmmxmmvi
mmaxtvtmmvimmvimmmtii


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgvfcsysn*isiqlkkvkikfvksicnkn**fkkkknqkk---

---MMSNVXISIXVFKXVXXS*xxnxixqdnqdpliglkmkmmivtmmixtmmmmxmmvi
mmaxtvtmmvimmvimmmtii

Frame B:
tvglleyfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKTKKK---

---*crmsxfpxmclxtwxxlkxxixsxkttkip*lg*k*k**s*l**sxl****x*w*l
*wpxr*l*w*l*w*l***ql

Frame C:
llaywsilfifklnintikks*n*ickinl*qklvi*kkkkpkkk---

---dvecpxfhxcv*xrggilxxefxpprqprsldwaenenddrdyddrdydddexdgdy
dgrdgdydgdydgdydddny

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFE484 (SFE484Q) /CSM/SF/SFE4-D/SFE484Q.Seq.d/ 178 4e-44
CHD344 (CHD344Q) /CSM/CH/CHD3-B/CHD344Q.Seq.d/ 178 4e-44
CHB194 (CHB194Q) /CSM/CH/CHB1-D/CHB194Q.Seq.d/ 178 4e-44
SFG217 (SFG217Q) /CSM/SF/SFG2-A/SFG217Q.Seq.d/ 172 2e-42
AFF284 (AFF284Q) /CSM/AF/AFF2-D/AFF284Q.Seq.d/ 172 2e-42
SLJ720 (SLJ720Q) /CSM/SL/SLJ7-A/SLJ720Q.Seq.d/ 170 1e-41
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/ 170 1e-41
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/ 170 1e-41
SLI573 (SLI573Q) /CSM/SL/SLI5-D/SLI573Q.Seq.d/ 170 1e-41
SLI384 (SLI384Q) /CSM/SL/SLI3-D/SLI384Q.Seq.d/ 170 1e-41

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 170 3e-78 4
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 170 1e-76 6
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 170 5e-71 8
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 170 3e-62 3
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 1e-24 2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 78 1e-10 1
AC005504|AC005504.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces. 40 0.13 5
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site. 42 0.34 2
BX088711|BX088711.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-39A12. 46 0.34 1
AC140195|AC140195.1 Mus musculus chromosome UNK clone RP24-64A19, WORKING DRAFT SEQUENCE, 6 unordered pieces. 46 0.34 1
dna update 2003.12.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 62 6e-09

protein update 2009. 1. 8
PSORT

psg: 0.26 gvh: 0.32 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.49 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
24.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for SFE484 is nuc

5' end seq. ID SFE484F
5' end seq.
>SFE484F.Seq
CACTGTTGGCCTACTGGAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAA
AAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAA
AAAAACCAAAAAAAAAA----------
Length of 5' end seq. 137
3' end seq. ID SFE484Z
3' end seq.
>SFE484Z.Seq
----------ATGATGTCGAATGTCCANATTTCCATANATGTGTTTAAANACGTGGNGGN
ATCTTAAGNTGNGAATTTNATCCNCCAAGACAACCAAGATCCCTTGATTGGGCTGAAAAT
GAAAATGATGATCGTGACTATGATGATCGNGACTATGATGATGATGAANATGATGGTGAT
TATGATGGCCGNGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAAT
TATT
Length of 3' end seq. 234
Connected seq. ID SFE484P
Connected seq.
>SFE484P.Seq
CACTGTTGGCCTACTGGAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAA
AAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAA
AAAAACCAAAAAAAAAA----------ATGATGTCGAATGTCCANATTTCCATANATGTG
TTTAAANACGTGGNGGNATCTTAAGNTGNGAATTTNATCCNCCAAGACAACCAAGATCCC
TTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGNGACTATGATGATG
ATGAANATGATGGTGATTATGATGGCCGNGACGGTGACTATGATGGTGATTATGATGGTG
ATTATGATGATGACAATTATT
Length of connected seq. 371
Full length Seq ID -
Full length Seq. -
Length of full length seq. -