SFE435
Library SF
(Link to library)
Clone ID SFE435
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15545-1
Original site URL
Representative seq. ID SFE435Z
(Link to Original site)
Representative DNA sequence
>SFE435 (SFE435Q) /CSM/SF/SFE4-B/SFE435Q.Seq.d/
XXXXXXXXXXCACCGAAGGTTGATACTTTAAATTCAATACCAATGATGTTCTCAACTTCA
AATAGATTCGTTTATTATGTACCAGCAAAATCAAATGACGATCCAAGATGGGATGCAGTT
ATCGATAAACTTCAAATGGTTGGTAGAGGCAATGGTGGCGCTGTTAGAGGTATCTATAAA
GGTGTTATTGAGACCACTTTCTTTGGCAAAAGAGTTTATTTGGTTGGTACCTATTCACCA
TTCTATAGTCAACAACAAAGAAATAAAAGTCAACGTATACTTTTCAATGATTTTCCAAAG
GAAGAATTTGATCCAACCATCACAAATCCTTTAACAAGTACTATGCTATTTAGAACTGAT
AAAGATCTCTCATTGGATATTACTTTGGCTGAAAAAGTTTTCTCTTGTAAAGACTTTTGT
GAAAAACATAAAGTATCATGTTTAGAATCTGATATGATGTTATTAACTGATAGTACTATA
GTTTTACTACAATTGGAACAACATTGTAGTCAAGTAAACTATATACCAAGTAATAATACC
GATACATTTTATCCAATCAAAGATAAAGATGGCATTTGTTGGACTACAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---PKVDTLNSIPMMFSTSNRFVYYVPAKSNDDPRWDAVIDKLQMVGRGNGGAVRGIYKG
VIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITNPLTSTMLFRTDK
DLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHCSQVNYIPSNNTD
TFYPIKDKDGICWTTI


Translated Amino Acid sequence (All Frames)
Frame A:
---teg*yfkfntndvlnfk*irllctskik*rskmgcsyr*tsngw*rqwwrc*ryl*r
cy*dhflwqkslfgwylftil*sttkk*kstytfq*fskgri*snhhksfnkyyai*n**
rsligyyfg*ksfll*rll*kt*simfri*ydvin**yysfttigttl*ssklytk**yr
yilsnqr*rwhlldyn


Frame B:
---PKVDTLNSIPMMFSTSNRFVYYVPAKSNDDPRWDAVIDKLQMVGRGNGGAVRGIYKG
VIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITNPLTSTMLFRTDK
DLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHCSQVNYIPSNNTD
TFYPIKDKDGICWTTI


Frame C:
---rrlil*iqyq*csqlqidsfimyqqnqmtiqdgmqlsinfkwlveamvallevsikv
llrplslakefiwlvpihhsivnnkeikvnvyfsmifqrknliqpsqil*qvlcylelik
ishwillwlkkfslvktfvknikyhv*nli*cy*livl*fyynwnnivvk*tiyqviipi
hfiqskikmafvglq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFE435 (SFE435Q) /CSM/SF/SFE4-B/SFE435Q.Seq.d/ 1152 0.0
AFI627 (AFI627Q) /CSM/AF/AFI6-B/AFI627Q.Seq.d/ 1128 0.0
AFC207 (AFC207Q) /CSM/AF/AFC2-A/AFC207Q.Seq.d/ 1118 0.0
AFF364 (AFF364Q) /CSM/AF/AFF3-C/AFF364Q.Seq.d/ 1116 0.0
AFO831 (AFO831Q) /CSM/AF/AFO8-B/AFO831Q.Seq.d/ 1076 0.0
CHD312 (CHD312Q) /CSM/CH/CHD3-A/CHD312Q.Seq.d/ 1072 0.0
AFK872 (AFK872Q) /CSM/AF/AFK8-C/AFK872Q.Seq.d/ 1070 0.0
AFB456 (AFB456Q) /CSM/AF/AFB4-C/AFB456Q.Seq.d/ 1037 0.0
AHK215 (AHK215Q) /CSM/AH/AHK2-A/AHK215Q.Seq.d/ 1035 0.0
CFG834 (CFG834Q) /CSM/CF/CFG8-B/CFG834Q.Seq.d/ 1031 0.0

own update 2004. 5.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC011252|AC011252.4 Drosophila melanogaster, chromosome 3R, region 83B-83C, BAC clone BACR23H21, complete sequence. 42 0.048 6
AI484136|AI484136.1 EST248943 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER1C5, mRNA sequence. 38 0.10 2
BG128254|BG128254.1 EST473900 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF19D15 5' sequence, mRNA sequence. 38 0.10 2
AI490786|AI490786.1 EST241494 tomato shoot, Cornell Lycopersicon esculentum cDNA clone cLEB3H9 similar to cinnamic acid 4-hydroxylase, mRNA sequence. 38 0.10 2
BG133859|BG133859.1 EST466751 tomato crown gall Lycopersicon esculentum cDNA clone cTOE14I10 5' sequence, mRNA sequence. 38 0.10 2
AI773934|AI773934.1 EST255034 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER8N1, mRNA sequence. 38 0.11 2
AC092695|AC092695.8 Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 42 0.38 5
AC123464|AC123464.4 Rattus norvegicus clone CH230-17P22, WORKING DRAFT SEQUENCE, 1 ordered piece. 46 0.54 1
BX323843|BX323843.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-10A23. 46 0.54 1
AE003601|AE003601.3 Drosophila melanogaster chromosome 3R, section 7 of 118 of the complete sequence. 42 0.61 6
dna update 2003.12.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

Y17877_1(Y17877|pid:none) Sycon raphanus mRNA for insulin recept... 36 0.87
BT011349_1(BT011349|pid:none) Drosophila melanogaster RH02355 fu... 35 1.1
AY069808_1(AY069808|pid:none) Drosophila melanogaster SD04942 fu... 35 1.1
AE014297_4620(AE014297|pid:none) Drosophila melanogaster chromos... 35 1.1
CP001175_2092(CP001175|pid:none) Listeria monocytogenes HCC23, c... 35 1.9
AC009322_3(AC009322|pid:none) Arabidopsis thaliana chromosome I ... 34 2.5
AM270068_10(AM270068|pid:none) Aspergillus niger contig An04c007... 34 3.3
AX814538_1(AX814538|pid:none) Sequence 19 from Patent WO03064471. 33 4.3
AE009439_1402(AE009439|pid:none) Methanopyrus kandleri AV19, com... 33 4.3
DQ812518_2(DQ812518|pid:none) Spironucleus barkhanus isolate Sp1... 33 4.3
protein update 2009. 5.23
PSORT

psg: 0.92 gvh: 0.39 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SFE435 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFE435Z
3' end seq.
>SFE435Z.Seq
----------CACCGAAGGTTGATACTTTAAATTCAATACCAATGATGTTCTCAACTTCA
AATAGATTCGTTTATTATGTACCAGCAAAATCAAATGACGATCCAAGATGGGATGCAGTT
ATCGATAAACTTCAAATGGTTGGTAGAGGCAATGGTGGCGCTGTTAGAGGTATCTATAAA
GGTGTTATTGAGACCACTTTCTTTGGCAAAAGAGTTTATTTGGTTGGTACCTATTCACCA
TTCTATAGTCAACAACAAAGAAATAAAAGTCAACGTATACTTTTCAATGATTTTCCAAAG
GAAGAATTTGATCCAACCATCACAAATCCTTTAACAAGTACTATGCTATTTAGAACTGAT
AAAGATCTCTCATTGGATATTACTTTGGCTGAAAAAGTTTTCTCTTGTAAAGACTTTTGT
GAAAAACATAAAGTATCATGTTTAGAATCTGATATGATGTTATTAACTGATAGTACTATA
GTTTTACTACAATTGGAACAACATTGTAGTCAAGTAAACTATATACCAAGTAATAATACC
GATACATTTTATCCAATCAAAGATAAAGATGGCATTTGTTGGACTACAATA
Length of 3' end seq. 581
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -