>SFE434 (SFE434Q) /CSM/SF/SFE4-B/SFE434Q.Seq.d/
CACTGTTGGCCTACTGGAACTTTGATAATTTTCAGTTTCACAAAAACCCGCATTTTTTCA
AAGAAACCTATCTCTCTATATATATATACCCACATAAAATGTCAATACCAAAAATTAGTC
AAGTTAAAGATTTAACACGTATTGAAAGAATTGGAGCACATTCACATATTAGAGGATTAG
GAATTGATGATTCATTAGAACCAAGAGAGATATCTCAAGGTATGGTTGGACAAGTTGGAG
CAAGAAAAGCAGCAGGATTAATATTACAAATGATAAAGGAAGGTAAGATAGCAGGTAGAG
CAATATTAATTGGAGGTGAACCAGGTACAGGTAAGACAGCGATTGCCATGGGTATGGCAC
AATCATTAGGAGAGAAGACTCCATTTACAGCAATTGCAGCCAGTGAAATATTTTCATTGG
AAATGAGTAAAACCGAAGCATTAACACAAGCATTCCGTCGTTCAATTGGCGTACGTATTA
AAGAAGAGACAGAGGTGATTTGTGGTGAAGTCGTAGATATACAAXXXXXXXXXX

LLAYWNFDNFQFHKNPHFFKETYLSIYIYPHKMSIPKISQVKDLTRIERIGAHSHIRGLG
IDDSLEPREISQGMVGQVGARKAAGLILQMIKEGKIAGRAILIGGEPGTGKTAIAMGMAQ
SLGEKTPFTAIAASEIFSLEMSKTEALTQAFRRSIGVRIKEETEVICGEVVDI---

Frame A:
hcwptgtliifsftktrifskkpislyiythikcqyqklvklki*hvlkelehihiled*
elmih*nqerylkvwldkleqekqqd*yyk**rkvr*qveqy*levnqvqvrqrlpwvwh
nh*errlhlqqlqpvkyfhwk*vkpkh*hkhsvvqlayvlkkrqr*fvvks*iy---


Frame B:
tvgllel**fsvsqkpaffqrnlslyiyipt*nvntkn*ss*rfnty*knwstfty*rir
n**firtkrdisrygwtswskkssrinitndkgr*dsr*sninwr*tryr*dsdchgygt
iirredsiysncsq*nifigne*nrsintsipsfnwrty*rrdrgdlw*srryt---


Frame C:
LLAYWNFDNFQFHKNPHFFKETYLSIYIYPHKMSIPKISQVKDLTRIERIGAHSHIRGLG
IDDSLEPREISQGMVGQVGARKAAGLILQMIKEGKIAGRAILIGGEPGTGKTAIAMGMAQ
SLGEKTPFTAIAASEIFSLEMSKTEALTQAFRRSIGVRIKEETEVICGEVVDI---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE434 (SFE434Q) /CSM/SF/SFE4-B/SFE434Q.Seq.d/                        967   0.0
SFC365 (SFC365Q) /CSM/SF/SFC3-C/SFC365Q.Seq.d/                        934   0.0
SFG570 (SFG570Q) /CSM/SF/SFG5-C/SFG570Q.Seq.d/                        918   0.0
SFD887 (SFD887Q) /CSM/SF/SFD8-D/SFD887Q.Seq.d/                        902   0.0
CHC484 (CHC484Q) /CSM/CH/CHC4-D/CHC484Q.Seq.d/                        902   0.0
AFL591 (AFL591Q) /CSM/AF/AFL5-D/AFL591Q.Seq.d/                        902   0.0
SFJ220 (SFJ220Q) /CSM/SF/SFJ2-A/SFJ220Q.Seq.d/                        894   0.0
CFF183 (CFF183Q) /CSM/CF/CFF1-D/CFF183Q.Seq.d/                        886   0.0
VFF618 (VFF618Q) /CSM/VF/VFF6-A/VFF618Q.Seq.d/                        864   0.0
VFA519 (VFA519Q) /CSM/VF/VFA5-A/VFA519Q.Seq.d/                        864   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BU722212|AF218071_1 (AF218071) reptin [Xenopus laevis], mRNA sequence.    54   1e-09  3
BU799415|BU799415.1 SJF2BNC08 SJF Schistosoma japonicum cDNA, mRNA sequence.    54   2e-07  3
BU724315|BU724315.1 SJMBFH01 SJM Schistosoma japonicum cDNA, mRNA sequence.    54   4e-07  3
BU724139|BU724139.1 SJMBDH10 SJM Schistosoma japonicum cDNA, mRNA sequence.    54   5e-07  3
BU804312|BU804312.1 SJFBJH04 SJF Schistosoma japonicum cDNA, mRNA sequence.    54   5e-07  3
BU795008|BU795008.1 SJF2DJG06 SJF Schistosoma japonicum cDNA, mRNA sequence.    54   5e-07  3
BU795746|BU795746.1 SJF2DUG07 SJF Schistosoma japonicum cDNA, mRNA sequence.    54   6e-07  2
BU793866|BU793866.1 SJF2BUD05 SJF Schistosoma japonicum cDNA, mRNA sequence.    54   6e-07  2
BU795521|BU795521.1 SJF2DPD04 SJF Schistosoma japonicum cDNA, mRNA sequence.    54   6e-07  2
CD132135|CD132135.1 MG1-0016P-V251-G04-U.B MG1-0016 Schistosoma mansoni cDNA clone MG1-0016P-V251-G04.B, mRNA sequence.    36   1e-06  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UW5) RecName: Full=RuvB-like helicase 2;          EC=3.6.1.-;     271   7e-72
BC123265_1(BC123265|pid:none) Xenopus laevis reptin, mRNA (cDNA ...   231   1e-59
CR761457_1(CR761457|pid:none) Xenopus tropicalis finished cDNA, ...   231   1e-59
BC047966_1(BC047966|pid:none) Xenopus laevis RuvB-like protein 2...   229   2e-59
(Q9DE27) RecName: Full=RuvB-like 2;          EC=3.6.1.-; AltName...   229   2e-59
BC008355_1(BC008355|pid:none) Homo sapiens RuvB-like 2 (E. coli)...   226   3e-58
(Q9Y230) RecName: Full=RuvB-like 2;          EC=3.6.1.-; AltName...   226   3e-58
AF151804_1(AF151804|pid:none) Homo sapiens CGI-46 protein mRNA, ...   226   3e-58
BC098042_1(BC098042|pid:none) Rattus norvegicus RuvB-like 2 (E. ...   224   1e-57
AK135404_1(AK135404|pid:none) Mus musculus 12 days embryo female...   223   3e-57

 psg: 0.75  gvh: 0.28  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFE434 is nuc

>SFE434F.Seq
CACTGTTGGCCTACTGGAACTTTGATAATTTTCAGTTTCACAAAAACCCGCATTTTTTCA
AAGAAACCTATCTCTCTATATATATATACCCACATAAAATGTCAATACCAAAAATTAGTC
AAGTTAAAGATTTAACACGTATTGAAAGAATTGGAGCACATTCACATATTAGAGGATTAG
GAATTGATGATTCATTAGAACCAAGAGAGATATCTCAAGGTATGGTTGGACAAGTTGGAG
CAAGAAAAGCAGCAGGATTAATATTACAAATGATAAAGGAAGGTAAGATAGCAGGTAGAG
CAATATTAATTGGAGGTGAACCAGGTACAGGTAAGACAGCGATTGCCATGGGTATGGCAC
AATCATTAGGAGAGAAGACTCCATTTACAGCAATTGCAGCCAGTGAAATATTTTCATTGG
AAATGAGTAAAACCGAAGCATTAACACAAGCATTCCGTCGTTCAATTGGCGTACGTATTA
AAGAAGAGACAGAGGTGATTTGTGGTGAAGTCGTAGATATACAA----------