NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFE377
Library SF
(Link to library)
Clone ID SFE377
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID SFE377Z
(Link to Original site)
Representative DNA sequence 
>SFE377 (SFE377Q) /CSM/SF/SFE3-D/SFE377Q.Seq.d/
XXXXXXXXXXTAAATCCGTTANNCNGATCATTCAAAAGAAAACCTCTAATCGTGATANTG
TCATCACTATTCTCATGGATTTAGTAAAGGNATCTGCNAACTTTGGTATGACTCTCTCTT
CA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---KSVXXIIQKKTSNRDXVITILMDLVKXSANFGMTLSS
Translated Amino Acid sequence (All Frames) 
Frame A:
---KSVXXIIQKKTSNRDXVITILMDLVKXSANFGMTLSS


Frame B:
---nplxxsfkrkplivixsslfswi**rxlxtlv*lsl


Frame C:
---irxxdhskenl*s*xchhyshgfskgicxlwydslf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE377 (SFE377Q) /CSM/SF/SFE3-D/SFE377Q.Seq.d/                        186   5e-47
VFM511 (VFM511Q) /CSM/VF/VFM5-A/VFM511Q.Seq.d/                        170   3e-42
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                        170   3e-42
SSH396 (SSH396Q) /CSM/SS/SSH3-D/SSH396Q.Seq.d/                        170   3e-42
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                        170   3e-42
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                        170   3e-42
SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/                        170   3e-42
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                        170   3e-42
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                        170   3e-42
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                        170   3e-42
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.   170   2e-39  1
AE014242|AE014242.1 Streptococcus agalactiae 2603V/R section 52 of 100 of the complete genome.    30   9.8    3
dna update 2003.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...    61   1e-08
protein update 2009. 1. 8
PSORT 

 psg: 0.56  gvh: 0.45  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SFE377 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFE377Z
3' end seq. 
>SFE377Z.Seq
----------TAAATCCGTTANNCNGATCATTCAAAAGAAAACCTCTAATCGTGATANTG
TCATCACTATTCTCATGGATTTAGTAAAGGNATCTGCNAACTTTGGTATGACTCTCTCTT
CA
Length of 3' end seq. 112
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -