SFE226
Library SF
(Link to library)
Clone ID SFE226
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16271-1
Original site URL
Representative seq. ID SFE226Z
(Link to Original site)
Representative DNA sequence
>SFE226 (SFE226Q) /CSM/SF/SFE2-B/SFE226Q.Seq.d/
XXXXXXXXXXGCCAAACAAGGTGATAACTCTGGTGATTTATTCTGTCAATCAAATTTCAA
CAAAGTCCAAGGTGACACTTGTTCAGTCCACGGTTNTTCATTTGTTCAATTAGGTTCTGG
TTTCCGTTACGAATGTGCTGCTACTTTAGTTTGCCAAGCTGGTACCTGTCAATNTCCACA
AAACTCAATCCCAACTGGTGATTGTATGGATATCGCCAACTCTTGTCCATCAGCATATGG
TTCAAGTTGCCAATGTACTTNTACCTCACAAATTATAACTGGTAAATGCACTGCTAGTCC
ATTCAACTTGGCTTCAAATTGTCAAACCTCTGTCCAAAACTTGGCCACATGTGCTATTGA
ACATGAATGTCCAAGCATTGAAAATATCGAATTAGGTCCAGATTCATGTCTCATGAAACA
CTGTAGATCTGAAATCTGTGATAACAATAATTGTATTGTTCAAACAAACACNTGTGGTGA
TGCACCAGTTTACCCAGTTTGTAACACCCCATCATCTTCATCTGTTATTTTGCCATCATT
TGTCTTATTAANTGTTGCCATTATTGCTTTATTATTCTAAAAATTTTATTAAAAACAAAA
TAAAATTATTTAAAAAATCGA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---KQGDNSGDLFCQSNFNKVQGDTCSVHGXSFVQLGSGFRYECAATLVCQAGTCQXPQN
SIPTGDCMDIANSCPSAYGSSCQCTXTSQIITGKCTASPFNLASNCQTSVQNLATCAIEH
ECPSIENIELGPDSCLMKHCRSEICDNNNCIVQTNTCGDAPVYPVCNTPSSSSVILPSFV
LLXVAIIALLF*kfy*kqnkii*ki


Translated Amino Acid sequence (All Frames)
Frame A:
---pnkvitlviysvnqistkskvtlvqstvxhlfn*vlvsvtnvlll*faklvpvnxhk
tqsqlvivwisptlvhqhmvqvanvlxphkl*lvnallvhstwlqivkplsktwphvlln
mnvqalkisn*vqihvs*ntvdlksvitiivlfkqtxvvmhqftqfvtphhlhllfchhl
sy*xlplllyysknfiknkiklfkks


Frame B:
---qtr**lw*filsikfqqspr*hlfsprxficsirfwfplrmccyfslpswylsxstk
lnpnw*lygyrqllsisiwfklpmyxyltnynw*mhc*siqlgfklsnlcpklghmcy*t
*mskh*kyrirsrfmshetl*i*nl**q*lycsnkhxw*ctslpsl*hpiificyfaiic
lixcchycfiilkillktk*nylknr


Frame C:
---KQGDNSGDLFCQSNFNKVQGDTCSVHGXSFVQLGSGFRYECAATLVCQAGTCQXPQN
SIPTGDCMDIANSCPSAYGSSCQCTXTSQIITGKCTASPFNLASNCQTSVQNLATCAIEH
ECPSIENIELGPDSCLMKHCRSEICDNNNCIVQTNTCGDAPVYPVCNTPSSSSVILPSFV
LLXVAIIALLF*kfy*kqnkii*ki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI776 (VFI776Q) /CSM/VF/VFI7-D/VFI776Q.Seq.d/ 1035 0.0
SLC529 (SLC529Q) /CSM/SL/SLC5-B/SLC529Q.Seq.d/ 1035 0.0
SFE226 (SFE226Q) /CSM/SF/SFE2-B/SFE226Q.Seq.d/ 1035 0.0
SFC278 (SFC278Q) /CSM/SF/SFC2-D/SFC278Q.Seq.d/ 1035 0.0
FC-BI21 (FC-BI21Q) /CSM/FC/FC-BI/FC-BI21Q.Seq.d/ 1019 0.0
VFI528 (VFI528Q) /CSM/VF/VFI5-B/VFI528Q.Seq.d/ 950 0.0
SLB206 (SLB206Q) /CSM/SL/SLB2-A/SLB206Q.Seq.d/ 607 e-173
FC-IC1493 (FC-IC1493Q) /CSM/FC-IC/FC-IC1493Q.Seq.d/ 559 e-158
FC-IC1419 (FC-IC1419Q) /CSM/FC-IC/FC-IC1419Q.Seq.d/ 559 e-158
FC-IC0719 (FC-IC0719Q) /CSM/FC-IC/FC-IC0719Q.Seq.d/ 559 e-158

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB079606|AB079606.1 Dictyostelium discoideum Dd-gdcA gene, complete cds. 1035 0.0 1
AB079253|AB079253.1 Dictyostelium discoideum Dd-gdcA mRNA, complete cds. 1035 0.0 1
AC134747|AC134747.2 Rattus norvegicus clone CH230-354L3, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 0.58 3
AC095795|AC095795.7 Rattus norvegicus clone CH230-9F18, *** SEQUENCING IN PROGRESS ***, 22 ordered pieces. 44 0.90 4
AP006138|AP006138.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT37A17, TM0240. 30 4.1 2
AC137618|AC137618.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0090H02, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces. 38 4.5 3
BH654517|BH654517.1 BOMJY27TR BO_2_3_KB Brassica oleracea genomic clone BOMJY27, DNA sequence. 36 8.9 2
AC142341|AC142341.1 Pan troglodytes BAC clone RP43-43C1 from 7, complete sequence. 42 8.9 1
AC092134|AC092134.4 Homo sapiens chromosome 16 clone RP11-264M12, complete sequence. 42 8.9 1
BX890602|BX890602.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-109H9. 42 8.9 1
dna update 2003.12.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m... 371 e-101
M33753_1(M33753|pid:none) D.melanogaster crumbs protein mRNA, co... 42 0.014
(P10040) RecName: Full=Protein crumbs; AltName: Full=95F; Flags:... 42 0.014
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 40 0.039
S18188(S18188)notch protein homolog - rat 40 0.052
AM502222_18(AM502222|pid:none) Leishmania infantum chromosome 4. 40 0.067
AB100603_1(AB100603|pid:none) Mus musculus Notch1 gene for trans... 40 0.067
AB100603_2(AB100603|pid:none) Mus musculus Notch1 gene for trans... 40 0.067
(Q01705) RecName: Full=Neurogenic locus notch homolog protein 1;... 40 0.067
AF508809_1(AF508809|pid:none) Mus musculus notch 1 protein mRNA,... 40 0.067
protein update 2009. 5.23
PSORT

psg: 0.75 gvh: 0.54 alm: 0.16 top: 0.67 tms: 0.07 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SFE226 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFE226Z
3' end seq.
>SFE226Z.Seq
----------GCCAAACAAGGTGATAACTCTGGTGATTTATTCTGTCAATCAAATTTCAA
CAAAGTCCAAGGTGACACTTGTTCAGTCCACGGTTNTTCATTTGTTCAATTAGGTTCTGG
TTTCCGTTACGAATGTGCTGCTACTTTAGTTTGCCAAGCTGGTACCTGTCAATNTCCACA
AAACTCAATCCCAACTGGTGATTGTATGGATATCGCCAACTCTTGTCCATCAGCATATGG
TTCAAGTTGCCAATGTACTTNTACCTCACAAATTATAACTGGTAAATGCACTGCTAGTCC
ATTCAACTTGGCTTCAAATTGTCAAACCTCTGTCCAAAACTTGGCCACATGTGCTATTGA
ACATGAATGTCCAAGCATTGAAAATATCGAATTAGGTCCAGATTCATGTCTCATGAAACA
CTGTAGATCTGAAATCTGTGATAACAATAATTGTATTGTTCAAACAAACACNTGTGGTGA
TGCACCAGTTTACCCAGTTTGTAACACCCCATCATCTTCATCTGTTATTTTGCCATCATT
TGTCTTATTAANTGTTGCCATTATTGCTTTATTATTCTAAAAATTTTATTAAAAACAAAA
TAAAATTATTTAAAAAATCGA
Length of 3' end seq. 611
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -