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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFE203
Library SF
(Link to library)
Clone ID SFE203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15542-1
Original site URL
Representative seq. ID SFE203P
(Link to Original site)
Representative DNA sequence 
>SFE203 (SFE203Q) /CSM/SF/SFE2-A/SFE203Q.Seq.d/
GGATTTTAAAAACTGTCATAATATACAAACAATGCATAATTGTAATAATAATGGATGAAT
CTTTCAATTCCATATTAGAACCAGAAAATGCATGGTTATTTTTATTTGATGATGTTTCAC
AATTGCAACAATTACCAATTGTTCAAAACAACCAAGAAAACTTTATAAATAGTATAGATT
TTAACACTGGCGATGTTACCACTACAAATATAAGTGGATTAAATTTTCAAAGTTTAGAGG
AATCATTAAATAGTGATACATCAATTGAAAATAAACCTCAAATCATTGAACAAATTCAAT
TTCTACAACAACAGCAACAACAGCAACATGACTAAATTCAACAACAATTACATAATTTTC
AACAACAATATCAACAACAATATCAACAACGTCAACAGCAATATCAACAACAATATCAAA
AACCATATACACCACCTTCTTTTATTTATTCTGAAAAAAATGATTTAGTTCCTCAACAAC
AATTTCATTTAGGTCAAGAAAATCTACAACAACCACCACAATCCTTACAACAACAACAAC
AACCACCATCACCATCATCACCACCACAACAACAACAACAACCACAACAAXXXXXXXXXX
GCAGCAAAAAGAAATAAATAGAAAGAATCGNTCAGAAGCAGTCATGGAATTCAGTGCCTC
TTTNTCANCGAATATTTTTTNATACNCCAAAGTTAGATCAACACCTTTTATCATATTTTC
AAACTCAAAAAACGAATAACACAATAAATACATTGAATGTAGACCAAAAAAGAGATAATA
TAGAAAAACAAAAAGAAAATACTTCACCACCTACTCCATCATCACCTGTACCAACTATAA
TAAACTCTAACTCAACTGATATAAATCAAATATCACCATCACAACAACAGCAACAGCAAC
AACAACAACAACAACAAACAACAGATATAAATAAAATATTAACATTACAACAATTAGAAC
AACAACAATTAGAATATCAAAAACAACAACAACAACAACAACAATTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ilktviiykqciiviimdesfnsilepenawlflfddvsqlqqlpivqnnqenfinsidf
ntgdvtttnisglnfqsleeslnsdtsienkpqiieqiqflqqqqqqqhd*IQQQLHNFQ
QQYQQQYQQRQQQYQQQYQKPYTPPSFIYSEKNDLVPQQQFHLGQENLQQPPQSLQQQQQ
PPSPSSPPQQQQQPQQ---

---QQKEINRKNRSEAVMEFSASXSXNIFXYXKVRSTPFIIFSNSKNE*hnkyiecrpkk
r*yrktkrkyfttysiitctnynkl*ln*yksnititttatattttttnnryk*ninitt
irtttiriskttttttti
Translated Amino Acid sequence (All Frames) 
Frame A:
gf*kls*ytnna*l***wmnlsipy*nqkmhgyfylmmfhncnnyqlfkttkktl*iv*i
ltlamlplqi*vd*ifkv*rnh*ivihqlkinlkslnkfnfynnsnnsnmtkfnnnyiif
nnninnninnvnsninnniknhihhlllfilkkmi*flnnnfi*vkkiynnhhnpynnnn
nhhhhhhhhnnnnnhn---

---aakrnk*kesxrsshgiqclfxxeyfxixqs*intfyhifklkkritq*ih*m*tkk
eii*knkkkilhhllhhhlyql**tltqli*ikyhhhnnsnsnnnnnnkqqi*iky*hyn
n*nnnn*niknnnnnnnnl

Frame B:
dfknchniqtmhncnnng*ifqfhirtrkcmvifi**cftiatitncskqprklyk*yrf
*hwrcyhykykwikfskfrgiik**yin*k*tsnh*tnsistttattat*lnsttit*fs
ttisttisttstaisttisktiyttffylf*kk*fsssttisfrsrkstttttilttttt
ttitiitttttttttt---

---QQKEINRKNRSEAVMEFSASXSXNIFXYXKVRSTPFIIFSNSKNE*hnkyiecrpkk
r*yrktkrkyfttysiitctnynkl*ln*yksnititttatattttttnnryk*ninitt
irtttiriskttttttti

Frame C:
ilktviiykqciiviimdesfnsilepenawlflfddvsqlqqlpivqnnqenfinsidf
ntgdvtttnisglnfqsleeslnsdtsienkpqiieqiqflqqqqqqqhd*IQQQLHNFQ
QQYQQQYQQRQQQYQQQYQKPYTPPSFIYSEKNDLVPQQQFHLGQENLQQPPQSLQQQQQ
PPSPSSPPQQQQQPQQ---

---skkk*ierixqkqswnsvplxxriffxtpkldqhllsyfqtqktnntintlnvdqkr
dniekqkentspptpsspvptiinsnstdinqispsqqqqqqqqqqqqttdinkiltlqq
leqqqleyqkqqqqqqqf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE203 (SFE203Q) /CSM/SF/SFE2-A/SFE203Q.Seq.d/                        571   e-162
SFK470 (SFK470Q) /CSM/SF/SFK4-C/SFK470Q.Seq.d/                        545   e-154
CHM538 (CHM538Q) /CSM/CH/CHM5-B/CHM538Q.Seq.d/                        545   e-154
CHK238 (CHK238Q) /CSM/CH/CHK2-B/CHK238Q.Seq.d/                        545   e-154
AFI753 (AFI753Q) /CSM/AF/AFI7-C/AFI753Q.Seq.d/                        545   e-154
AFE428 (AFE428Q) /CSM/AF/AFE4-B/AFE428Q.Seq.d/                        545   e-154
SHJ569 (SHJ569Q) /CSM/SH/SHJ5-C/SHJ569Q.Seq.d/                        535   e-151
CHO226 (CHO226Q) /CSM/CH/CHO2-B/CHO226Q.Seq.d/                        535   e-151
AHJ780 (AHJ780Q) /CSM/AH/AHJ7-D/AHJ780Q.Seq.d/                        507   e-143
AHB612 (AHB612Q) /CSM/AH/AHB6-A/AHB612Q.Seq.d/                        504   e-141
own update 2002.11.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   0.003  21
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   0.003  17
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    30   0.003  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.004  18
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   0.004  13
AC100299|AC100299.1 Mus musculus clone RP23-95G23, LOW-PASS SEQUENCE SAMPLING.    40   0.006  4
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32   0.012  14
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.023  15
AL356599|AL356599.19 Human DNA sequence from clone RP11-545I5 on chromosome 6.    36   0.030  5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   0.045  11
dna update 2003.12.23
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 736,918,835
protein update 2009. 5.23
PSORT 

 psg: 0.65  gvh: 0.16  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SFE203 is nuc
5' end seq. ID SFE203F
5' end seq. 
>SFE203F.Seq
GGATTTTAAAAACTGTCATAATATACAAACAATGCATAATTGTAATAATAATGGATGAAT
CTTTCAATTCCATATTAGAACCAGAAAATGCATGGTTATTTTTATTTGATGATGTTTCAC
AATTGCAACAATTACCAATTGTTCAAAACAACCAAGAAAACTTTATAAATAGTATAGATT
TTAACACTGGCGATGTTACCACTACAAATATAAGTGGATTAAATTTTCAAAGTTTAGAGG
AATCATTAAATAGTGATACATCAATTGAAAATAAACCTCAAATCATTGAACAAATTCAAT
TTCTACAACAACAGCAACAACAGCAACATGACTAAATTCAACAACAATTACATAATTTTC
AACAACAATATCAACAACAATATCAACAACGTCAACAGCAATATCAACAACAATATCAAA
AACCATATACACCACCTTCTTTTATTTATTCTGAAAAAAATGATTTAGTTCCTCAACAAC
AATTTCATTTAGGTCAAGAAAATCTACAACAACCACCACAATCCTTACAACAACAACAAC
AACCACCATCACCATCATCACCACCACAACAACAACAACAACCACAACAA----------
Length of 5' end seq. 590
3' end seq. ID SFE203Z
3' end seq. 
>SFE203Z.Seq
----------GCAGCAAAAAGAAATAAATAGAAAGAATCGNTCAGAAGCAGTCATGGAAT
TCAGTGCCTCTTTNTCANCGAATATTTTTTNATACNCCAAAGTTAGATCAACACCTTTTA
TCATATTTTCAAACTCAAAAAACGAATAACACAATAAATACATTGAATGTAGACCAAAAA
AGAGATAATATAGAAAAACAAAAAGAAAATACTTCACCACCTACTCCATCATCACCTGTA
CCAACTATAATAAACTCTAACTCAACTGATATAAATCAAATATCACCATCACAACAACAG
CAACAGCAACAACAACAACAACAACAAACAACAGATATAAATAAAATATTAACATTACAA
CAATTAGAACAACAACAATTAGAATATCAAAAACAACAACAACAACAACAACAATTTA
Length of 3' end seq. 408
Connected seq. ID SFE203P
Connected seq. 
>SFE203P.Seq
GGATTTTAAAAACTGTCATAATATACAAACAATGCATAATTGTAATAATAATGGATGAAT
CTTTCAATTCCATATTAGAACCAGAAAATGCATGGTTATTTTTATTTGATGATGTTTCAC
AATTGCAACAATTACCAATTGTTCAAAACAACCAAGAAAACTTTATAAATAGTATAGATT
TTAACACTGGCGATGTTACCACTACAAATATAAGTGGATTAAATTTTCAAAGTTTAGAGG
AATCATTAAATAGTGATACATCAATTGAAAATAAACCTCAAATCATTGAACAAATTCAAT
TTCTACAACAACAGCAACAACAGCAACATGACTAAATTCAACAACAATTACATAATTTTC
AACAACAATATCAACAACAATATCAACAACGTCAACAGCAATATCAACAACAATATCAAA
AACCATATACACCACCTTCTTTTATTTATTCTGAAAAAAATGATTTAGTTCCTCAACAAC
AATTTCATTTAGGTCAAGAAAATCTACAACAACCACCACAATCCTTACAACAACAACAAC
AACCACCATCACCATCATCACCACCACAACAACAACAACAACCACAACAA----------
GCAGCAAAAAGAAATAAATAGAAAGAATCGNTCAGAAGCAGTCATGGAATTCAGTGCCTC
TTTNTCANCGAATATTTTTTNATACNCCAAAGTTAGATCAACACCTTTTATCATATTTTC
AAACTCAAAAAACGAATAACACAATAAATACATTGAATGTAGACCAAAAAAGAGATAATA
TAGAAAAACAAAAAGAAAATACTTCACCACCTACTCCATCATCACCTGTACCAACTATAA
TAAACTCTAACTCAACTGATATAAATCAAATATCACCATCACAACAACAGCAACAGCAAC
AACAACAACAACAACAAACAACAGATATAAATAAAATATTAACATTACAACAATTAGAAC
AACAACAATTAGAATATCAAAAACAACAACAACAACAACAACAATTTA
Length of connected seq. 998
Full length Seq ID -
Full length Seq. -
Length of full length seq. -