SFE195 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFE195
Library	SF (Link to library)
Clone ID	SFE195 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16412-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFE1-D/SFE195Q.Seq.d/
Representative seq. ID	SFE195P (Link to Original site)
Representative DNA sequence	>SFE195 (SFE195Q) /CSM/SF/SFE1-D/SFE195Q.Seq.d/ ATTTTTGGACTTGCAAAATATATATATAAAAAATAAAAAAATGAGTGAAAACGCACAAAA GGCAACAGAATTTAAAAATCAAGGTAATGCTGCATTTTCAAGTAAAGATTATAATTCAGC AGTGAAATGTTTTGATCAAGCAATTGAATTAGATCCAAGTAATCATATTTTATATAGTAA TAGATCAGCATCATTACTTGCATTAGATAAGAATGAAGATGCATTAACAGATGCAAAGAA AGCAATTGAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAAACCAATGCACTCTA TAAATTGGGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGTTTAAAGATTGATCC AACCAATCAACAATTAGAAGATGCATTAGAGGATGCACAATACGCCACAACTGGTGCAAA AGACCCAGCTTCAGCAATGGCAAACCTTTTCTCTGCACAAAATTTAACAAAACTTCGTTT CAATCCAAAGACAGCACCATTCTTCCAACAACCAGATTTCGTTGCAATCATGGATCAAAT TTCAAAGAATCCATCACTTTTCTCACAGTATATTXXXXXXXXXXACTCGACGATGCATAC AAAGCCTACAGCAGTGCAGTACTTGAGGATAAGAATGCAGACACCACTGCAAACATGAAA AAGATTGAAAAGTTAAAGAAACAACGTGACGATGAGGCTTATCTCTCTGTGGATCAATCA ATCATTGAAAAGAATAAAGGTGTTGAACACTTTAAAAAAGGTGAATTCCCAGAGGCAATC AAATGTTTCGAGGAGGCAATTCGTCGTAATCCAAAGGACCACACAATCTATAGCAATCGT TCCGCAGCCTATAGCAAATTGTTAGAATATAAATTGGCAATCAAGGATGCCGATAAATGT ATCGAATTGGAGCCAACATTCATCAAAGGTTACATTAGAAAAGGTACTGCCTTATTCGCA ATGAGAGAGTATCAACAAGCTTTGGAGGTCTATGATCAAGGTTTAAGAATTGAAGCCAAC AATCCTGAACTCTTGGATCTCTCAAGAAAGACTGTCGCCGCTCTCACTAAATTACAAAGT ACTCTCACCGATGAAGAACGTCTTCAACAAGCTGCCAAAGATCCAGAAATTCAAAAGATT CTCTCTGATCCAATCATGAATCAAGTCTTAAAAGATATGTCTGAAAATCCTGCTGCTGCT CAAGATCATCTTAAAAATCCATTAATTAGGCTAAATTCCAAAAATAGTTAATGCNGGTAA GTTAATTAGGTT
sequence update	2001. 6. 1
Translated Amino Acid sequence	FLDLQNIYIKNKKMSENAQKATEFKNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSN RSASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDP TNQQLEDALEDAQYATTGAKDPASAMANLFSAQNLTKLRFNPKTAPFFQQPDFVAIMDQI SKNPSLFSQYI--- ---LDDAYKAYSSAVLEDKNADTTANMKKIEKLKKQRDDEAYLSVDQSIIEKNKGVEHFK KGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLAIKDADKCIELEPTFIKGYI RKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVAALTKLQSTLTDEERLQQAA KDPEIQKILSDPIMNQVLKDMSENPAAAQDHLKNPLIRLNSKNScxvn*v
Translated Amino Acid sequence (All Frames)	Frame A: ifglakyiykkknekrtkgnriksrccifkrlfssemfssnirsksyfi* isiitcirercinrckesnietrlvkrlfkrnqctligsfrrsreisrgwfkds nqstirrcirgctirhnwckrpsfsngkpflctkfnktsfqskdstilpttrfrcnhgsn fkesitfltvy--- ---trrciqslqqcstgecrhhckhekdkvkettrglslcgsinhkerctl* kriprgnqmfrggnssskgphnlqsfrslqivriignqgcrmyriganihqrlh kryclirnervstsfgglsrfknsqqstlgslkkdcrrshitkyshrrtsstsc qrsrnskdslsnhesslkryvkscccsrssksinakfqklmxvslg Frame B: FLDLQNIYIKNKKMSENAQKATEFKNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSN RSASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDP TNQQLEDALEDAQYATTGAKDPASAMANLFSAQNLTKLRFNPKTAPFFQQPDFVAIMDQI SKNPSLFSQYI--- ---LDDAYKAYSSAVLEDKNADTTANMKKIEKLKKQRDDEAYLSVDQSIIEKNKGVEHFK KGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLAIKDADKCIELEPTFIKGYI RKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVAALTKLQSTLTDEERLQQAA KDPEIQKILSDPIMNQVLKDMSENPAAAQDHLKNPLIRLNSKNScxvnv Frame C: fwtckiyikikkvkthkrqqnlkikvmlhfqvkiiiqqnvlikqlniqviifyivi dqhhylhirmkmhqmqrkqlnnqigqkviekpmhsinwvvskkqrnqqrlvrliq pinnkmhrmhntpqlvqktqlqqwqtfslhkiqnfvsiqrqhhssnnqislqswikf qrihhfshsi--- ---stmhtkptavqylrirmqtplqtkrlksrnnvtmrlislwinqslkrikvlntlk kvnsqrqsnvsrrqfvviqrttqsiaivpqpiancninwqsrmpinvsnwsqhsskvtl ekvlpysqesinklwrsmikvelkptilnswisqerlsplslnykvlspmknvfnklp kiqkfkrfsliqsikskiclkillllkiilkihlgipkivnagklir
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFE195 (SFE195Q) /CSM/SF/SFE1-D/SFE195Q.Seq.d/ 2375 0.0 SFG510 (SFG510Q) /CSM/SF/SFG5-A/SFG510Q.Seq.d/ 1336 0.0 AFA832 (AFA832Q) /CSM/AF/AFA8-B/AFA832Q.Seq.d/ 1326 0.0 SFI839 (SFI839Q) /CSM/SF/SFI8-B/SFI839Q.Seq.d/ 1312 0.0 CFH374 (CFH374Q) /CSM/CF/CFH3-D/CFH374Q.Seq.d/ 1312 0.0 AFE163 (AFE163Q) /CSM/AF/AFE1-C/AFE163Q.Seq.d/ 1308 0.0 VFC573 (VFC573Q) /CSM/VF/VFC5-D/VFC573Q.Seq.d/ 1306 0.0 SFE324 (SFE324Q) /CSM/SF/SFE3-A/SFE324Q.Seq.d/ 1300 0.0 SFG279 (SFG279Q) /CSM/SF/SFG2-D/SFG279Q.Seq.d/ 1296 0.0 AFG635 (AFG635Q) /CSM/AF/AFG6-B/AFG635Q.Seq.d/ 1296 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BI513962\|BI513962.1 BB160014A11E04.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A11E04 5', mRNA sequence. 50 0.004 2 BI513877\|BI513877.1 BB160014A10E04 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A10E04 5', mRNA sequence. 50 0.004 2 AP004826\|AP004826.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 5/10. 36 0.089 10 AL929354\|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4. 32 0.12 11 BQ416054\|BQ416054.1 GA__Ed0106D05r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0106D05r, mRNA sequence. 44 0.27 2 AC140373\|AC140373.2 Mus musculus chromosome 15 clone RP23-197O10, complete sequence. 48 0.30 1 AC138095\|AC138095.2 Mus musculus clone RP24-536E1, WORKING DRAFT SEQUENCE, 10 unordered pieces. 48 0.30 1 BH131424\|BH131424.1 ENTPC18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 0.30 1 AZ682362\|AZ682362.1 ENTIS70TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 0.30 1 AP003133\|AP003133.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 5/10. 36 0.82 10
dna update	2003.12.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54DA8) RecName: Full=Protein STIP1 homolog; 420 e-116 U89984_1(U89984\|pid:none) Acanthamoeba castellanii transformatio... 204 4e-51 AP008210_1442(AP008210\|pid:none) Oryza sativa (japonica cultivar... 197 6e-49 CP001324_114(CP001324\|pid:none) Micromonas sp. RCC299 chromosome... 197 6e-49 EF147519_1(EF147519\|pid:none) Populus trichocarpa clone WS0123_C... 197 8e-49 FB910833_1(FB910833\|pid:none) Sequence 130106 from Patent WO2008... 197 8e-49 FB910851_1(FB910851\|pid:none) Sequence 130124 from Patent WO2008... 197 8e-49 FB910853_1(FB910853\|pid:none) Sequence 130126 from Patent WO2008... 197 8e-49 BT034001_1(BT034001\|pid:none) Zea mays full-length cDNA clone ZM... 196 1e-48 EU972939_1(EU972939\|pid:none) Zea mays clone 390399 heat shock p... 196 1e-48
protein update	2009. 5.23
PSORT	psg: 0.45 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 40.0 %: cytoplasmic 8.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: plasma membrane >> prediction for SFE195 is nuc
5' end seq. ID	SFE195F
5' end seq.	>SFE195F.Seq ATTTTTGGACTTGCAAAATATATATATAAAAAATAAAAAAATGAGTGAAAACGCACAAAA GGCAACAGAATTTAAAAATCAAGGTAATGCTGCATTTTCAAGTAAAGATTATAATTCAGC AGTGAAATGTTTTGATCAAGCAATTGAATTAGATCCAAGTAATCATATTTTATATAGTAA TAGATCAGCATCATTACTTGCATTAGATAAGAATGAAGATGCATTAACAGATGCAAAGAA AGCAATTGAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAAACCAATGCACTCTA TAAATTGGGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGTTTAAAGATTGATCC AACCAATCAACAATTAGAAGATGCATTAGAGGATGCACAATACGCCACAACTGGTGCAAA AGACCCAGCTTCAGCAATGGCAAACCTTTTCTCTGCACAAAATTTAACAAAACTTCGTTT CAATCCAAAGACAGCACCATTCTTCCAACAACCAGATTTCGTTGCAATCATGGATCAAAT TTCAAAGAATCCATCACTTTTCTCACAGTATATT----------
Length of 5' end seq.	574
3' end seq. ID	SFE195Z
3' end seq.	>SFE195Z.Seq ----------ACTCGACGATGCATACAAAGCCTACAGCAGTGCAGTACTTGAGGATAAGA ATGCAGACACCACTGCAAACATGAAAAAGATTGAAAAGTTAAAGAAACAACGTGACGATG AGGCTTATCTCTCTGTGGATCAATCAATCATTGAAAAGAATAAAGGTGTTGAACACTTTA AAAAAGGTGAATTCCCAGAGGCAATCAAATGTTTCGAGGAGGCAATTCGTCGTAATCCAA AGGACCACACAATCTATAGCAATCGTTCCGCAGCCTATAGCAAATTGTTAGAATATAAAT TGGCAATCAAGGATGCCGATAAATGTATCGAATTGGAGCCAACATTCATCAAAGGTTACA TTAGAAAAGGTACTGCCTTATTCGCAATGAGAGAGTATCAACAAGCTTTGGAGGTCTATG ATCAAGGTTTAAGAATTGAAGCCAACAATCCTGAACTCTTGGATCTCTCAAGAAAGACTG TCGCCGCTCTCACTAAATTACAAAGTACTCTCACCGATGAAGAACGTCTTCAACAAGCTG CCAAAGATCCAGAAATTCAAAAGATTCTCTCTGATCCAATCATGAATCAAGTCTTAAAAG ATATGTCTGAAAATCCTGCTGCTGCTCAAGATCATCTTAAAAATCCATTAATTAGGCTAA ATTCCAAAAATAGTTAATGCNGGTAAGTTAATTAGGTT
Length of 3' end seq.	688
Connected seq. ID	SFE195P
Connected seq.	>SFE195P.Seq ATTTTTGGACTTGCAAAATATATATATAAAAAATAAAAAAATGAGTGAAAACGCACAAAA GGCAACAGAATTTAAAAATCAAGGTAATGCTGCATTTTCAAGTAAAGATTATAATTCAGC AGTGAAATGTTTTGATCAAGCAATTGAATTAGATCCAAGTAATCATATTTTATATAGTAA TAGATCAGCATCATTACTTGCATTAGATAAGAATGAAGATGCATTAACAGATGCAAAGAA AGCAATTGAATTGAAACCAGATTGGTCAAAAGGTTATTTAAGAGAAACCAATGCACTCTA TAAATTGGGTCGTTTCGAAGAAGCAGAGAAATCAGCAGAGGCTGGTTTAAAGATTGATCC AACCAATCAACAATTAGAAGATGCATTAGAGGATGCACAATACGCCACAACTGGTGCAAA AGACCCAGCTTCAGCAATGGCAAACCTTTTCTCTGCACAAAATTTAACAAAACTTCGTTT CAATCCAAAGACAGCACCATTCTTCCAACAACCAGATTTCGTTGCAATCATGGATCAAAT TTCAAAGAATCCATCACTTTTCTCACAGTATATT----------ACTCGACGATGCATAC AAAGCCTACAGCAGTGCAGTACTTGAGGATAAGAATGCAGACACCACTGCAAACATGAAA AAGATTGAAAAGTTAAAGAAACAACGTGACGATGAGGCTTATCTCTCTGTGGATCAATCA ATCATTGAAAAGAATAAAGGTGTTGAACACTTTAAAAAAGGTGAATTCCCAGAGGCAATC AAATGTTTCGAGGAGGCAATTCGTCGTAATCCAAAGGACCACACAATCTATAGCAATCGT TCCGCAGCCTATAGCAAATTGTTAGAATATAAATTGGCAATCAAGGATGCCGATAAATGT ATCGAATTGGAGCCAACATTCATCAAAGGTTACATTAGAAAAGGTACTGCCTTATTCGCA ATGAGAGAGTATCAACAAGCTTTGGAGGTCTATGATCAAGGTTTAAGAATTGAAGCCAAC AATCCTGAACTCTTGGATCTCTCAAGAAAGACTGTCGCCGCTCTCACTAAATTACAAAGT ACTCTCACCGATGAAGAACGTCTTCAACAAGCTGCCAAAGATCCAGAAATTCAAAAGATT CTCTCTGATCCAATCATGAATCAAGTCTTAAAAGATATGTCTGAAAATCCTGCTGCTGCT CAAGATCATCTTAAAAATCCATTAATTAGGCTAAATTCCAAAAATAGTTAATGCNGGTAA GTTAATTAGGTT
Length of connected seq.	1262
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas