SFE160
Library SF
(Link to library)
Clone ID SFE160
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15589-1
Original site URL
Representative seq. ID SFE160P
(Link to Original site)
Representative DNA sequence
>SFE160 (SFE160Q) /CSM/SF/SFE1-C/SFE160Q.Seq.d/
CACTGTTGGCCTACTGGNATATATATACATAAATATTTATTTTTATTTTTATTTTTTTTA
TAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGNGTAATATTTGTTT
TTTTTTTTTTTTAAAAANGGGGXXXXXXXXXXGATGGTTTTTCANCAGCACCCAAAAGAT
GAATACTTGAATCTGATTTTGGTGGTAAAGTGTCAACCAATGCATTTGAGTGTCTTTGTA
AGGCCACACAGGCTGATGGTTTTAAAAGTTCTCTATCAATTGTACTTAAAATTCTTACAC
ATAATGTTGATCCTGATGTCGATTGATNCAATACCAGTATTTGAATCACCCATCTCTAAT
AANTGGCCAATTAATAATGGCACGGATCTAANACGTNNAACTTCTTCCTGAGCANGTAAT
AACTCTCTTTTCCNAGCTCTTTATATTCATATTTGGTATATTCCTCNTGAATATTGAAAA
AATCTNATTTACTTTCTAAACTTTTCATTTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
tvgllxyiyiniyfyfyffynfpt*qyliiiwy**XNICFFFFLKXG---

---MVFXQHPKDEYLNLILVVKCQPMHLSVFVRPHRLMVLKVLYQLYLKFLHIMLILMSI
DXIPVFESPISNXWPINNGTDLXRXTSS*axnnslfxalyihiwyipxey*knliyflnf
sf


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgiyihkylflflffl*fsnitisnynlvlix*ylfffffkxg---

---dgfsxapkr*ilesdfggkvstnafeclckatqadgfksslsivlkilthnvdpdvd
*xntsi*ithl**xan**whgsxtxnfflsx**lsfpsslysylvyss*ilkksxllskl
fif

Frame B:
tvgllxyiyiniyfyfyffynfpt*qyliiiwy**XNICFFFFLKXG---

---MVFXQHPKDEYLNLILVVKCQPMHLSVFVRPHRLMVLKVLYQLYLKFLHIMLILMSI
DXIPVFESPISNXWPINNGTDLXRXTSS*axnnslfxalyihiwyipxey*knliyflnf
sf

Frame C:
llaywxiyt*ififififfiifqhnni*l*fginxvifvffff*kx---

---wffxstqkmnt*i*fww*svnqci*vsl*ghtg*wf*kfsinct*nsyt*c*s*crl
xqyqylnhpslixgqlimari*xvxllpexvitlfsxlfififgiflxniekixftf*tf
hf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFE160 (SFE160Q) /CSM/SF/SFE1-C/SFE160Q.Seq.d/ 654 0.0
AFO426 (AFO426Q) /CSM/AF/AFO4-B/AFO426Q.Seq.d/ 537 e-152
SSC647 (SSC647Q) /CSM/SS/SSC6-B/SSC647Q.Seq.d/ 529 e-149
AFM275 (AFM275Q) /CSM/AF/AFM2-D/AFM275Q.Seq.d/ 529 e-149
CFI392 (CFI392Q) /CSM/CF/CFI3-D/CFI392Q.Seq.d/ 513 e-145
CFK182 (CFK182Q) /CSM/CF/CFK1-D/CFK182Q.Seq.d/ 511 e-144
VFA731 (VFA731Q) /CSM/VF/VFA7-B/VFA731Q.Seq.d/ 505 e-142
AFH777 (AFH777Q) /CSM/AF/AFH7-D/AFH777Q.Seq.d/ 464 e-130
AFC465 (AFC465Q) /CSM/AF/AFC4-C/AFC465Q.Seq.d/ 442 e-123
VFH717 (VFH717Q) /CSM/VF/VFH7-A/VFH717Q.Seq.d/ 430 e-120

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L16578|L16578.1 Dictyostelium discoideum HIV1 TAT-binding protein homologous protein mRNA, complete cds. 323 e-170 5
AL031798|AL031798.1 S.pombe chromosome III cosmid c576. 66 5e-07 1
AV982159|AV982159.1 Ciona intestinalis cDNA, clone:citb16f24, 5' end, single read. 50 2e-04 2
BW239760|BW239760.1 Ciona intestinalis cDNA, clone:cicl105j07, 5' end, single read. 50 2e-04 2
BP025625|BP025625.1 Ciona intestinalis cDNA, clone:cits38n22, 5' end, single read. 50 2e-04 2
BW294534|BW294534.1 Ciona intestinalis cDNA, clone:cigd007p17, 5' end, single read. 50 2e-04 2
AV992355|AV992355.1 Ciona intestinalis cDNA, clone:cicl58m07, 5' end, single read. 50 2e-04 2
AV996318|AV996318.1 Ciona intestinalis cDNA, clone:cicl25a20, 5' end, single read. 50 2e-04 2
BP027303|BP027303.1 Ciona intestinalis cDNA, clone:cits47l09, 5' end, single read. 50 2e-04 2
BW284404|BW284404.1 Ciona intestinalis cDNA, clone:cigd024n04, 5' end, single read. 50 2e-04 2
dna update 2003.12.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK071476_1(AK071476|pid:none) Oryza sativa Japonica Group cDNA c... 84 3e-23
AB070253_1(AB070253|pid:none) Oryza sativa Japonica Group OsRPT3... 84 3e-23
BX908789_22(BX908789|pid:none) Neurospora crassa DNA linkage gro... 84 6e-23
CR382123_278(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 80 2e-22
AC147002_2(AC147002|pid:none) Medicago truncatula clone mth2-151... 81 2e-22
EF147477_1(EF147477|pid:none) Populus trichocarpa clone WS01231_... 81 3e-22
EF148658_1(EF148658|pid:none) Populus trichocarpa x Populus delt... 81 3e-22
(P46507) RecName: Full=26S protease regulatory subunit 6B; AltNa... 82 5e-22
DQ443126_1(DQ443126|pid:none) Bombyx mori 26S protease regulator... 82 5e-22
AE016819_627(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 80 6e-22
protein update 2009. 5.23
PSORT

psg: 0.79 gvh: 0.53 alm: 0.30 top: 0.23 tms: 0.07 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
20.0 %: mitochondrial
16.0 %: nuclear
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for SFE160 is end

5' end seq. ID SFE160F
5' end seq.
>SFE160F.Seq
CACTGTTGGCCTACTGGNATATATATACATAAATATTTATTTTTATTTTTATTTTTTTTA
TAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGNGTAATATTTGTTT
TTTTTTTTTTTTAAAAANGGGG----------
Length of 5' end seq. 142
3' end seq. ID SFE160Z
3' end seq.
>SFE160Z.Seq
----------GATGGTTTTTCANCAGCACCCAAAAGATGAATACTTGAATCTGATTTTGG
TGGTAAAGTGTCAACCAATGCATTTGAGTGTCTTTGTAAGGCCACACAGGCTGATGGTTT
TAAAAGTTCTCTATCAATTGTACTTAAAATTCTTACACATAATGTTGATCCTGATGTCGA
TTGATNCAATACCAGTATTTGAATCACCCATCTCTAATAANTGGCCAATTAATAATGGCA
CGGATCTAANACGTNNAACTTCTTCCTGAGCANGTAATAACTCTCTTTTCCNAGCTCTTT
ATATTCATATTTGGTATATTCCTCNTGAATATTGAAAAAATCTNATTTACTTTCTAAACT
TTTCATTTTT
Length of 3' end seq. 360
Connected seq. ID SFE160P
Connected seq.
>SFE160P.Seq
CACTGTTGGCCTACTGGNATATATATACATAAATATTTATTTTTATTTTTATTTTTTTTA
TAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGNGTAATATTTGTTT
TTTTTTTTTTTTAAAAANGGGG----------GATGGTTTTTCANCAGCACCCAAAAGAT
GAATACTTGAATCTGATTTTGGTGGTAAAGTGTCAACCAATGCATTTGAGTGTCTTTGTA
AGGCCACACAGGCTGATGGTTTTAAAAGTTCTCTATCAATTGTACTTAAAATTCTTACAC
ATAATGTTGATCCTGATGTCGATTGATNCAATACCAGTATTTGAATCACCCATCTCTAAT
AANTGGCCAATTAATAATGGCACGGATCTAANACGTNNAACTTCTTCCTGAGCANGTAAT
AACTCTCTTTTCCNAGCTCTTTATATTCATATTTGGTATATTCCTCNTGAATATTGAAAA
AATCTNATTTACTTTCTAAACTTTTCATTTTT
Length of connected seq. 502
Full length Seq ID -
Full length Seq. -
Length of full length seq. -