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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFE141
Library SF
(Link to library)
Clone ID SFE141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFE141Z
(Link to Original site)
Representative DNA sequence 
>SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/
XXXXXXXXXXCCATACATTTATCCATTATATGGTTTAGGTGAATTACCACAAGCATTTGC
CCGTTTATCTGCTATCTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATATTGT
TTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTGA
TAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTAT
TCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAAGAAATTTGAATCACT
CCAAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTAT
GTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCACTGT
TGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAATTCA
AGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGACAA
TGTTTTCATCTCAAAATCATATGATGCTACCTCTCACTTTGAAACCACTTGTGAAGATGT
CATGGATATGTACAAGAGAATCACTGGTAAAGATTTAGTTCTCACTGTTCATCCAAATAT
TCTTAAACAACAAGAAGAAGCGGTAACCAAGAACAAGAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---YIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDK
IVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQVKRQSDMYVGVMS
SAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDFIEPIADGTADNV
FISKSYDATSHFETTCEDVMDMYKRITGKDLVLTVHPNILKQQEEAVTKNKK
Translated Amino Acid sequence (All Frames) 
Frame A:
---htfihymv*vnyhkhlpvyllsmvvhiclinqlkilfsmkkrkllklhlkvkl*hvi
klfvihhisqikfkrkvklfvqfvf*mvqfhllirnlnhskslshknklnvnqictlvlc
hplivsvqrvntlpsfqpllkpmnqrkn*hqltly*vqfkrnlsiflislnqllmvlptm
fssqnhmmlpltlkplvkmswictreslvki*fslfiqiflnnkkkr*prtr


Frame B:
---ihlsiiwfr*ittsicpficylwwyiya**tn*kycfr*rkeny*syi*r*ncnm**
ncl*siifpk*ssker*nysfnlyfewsnsic**ei*itpnhyptkts*tsiryvrwcyv
irslclskg*ihchrfshc*nq*treristslrfirsnsreiclyf*fh*tnc*wycrqc
fhlkii*cylsl*nhl*rchgyvqenhw*rfsshcsskys*ttrrsgnqeqe


Frame C:
---YIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDK
IVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQVKRQSDMYVGVMS
SAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDFIEPIADGTADNV
FISKSYDATSHFETTCEDVMDMYKRITGKDLVLTVHPNILKQQEEAVTKNKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/                       1368   0.0
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/                       1368   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                       1360   0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/                       1354   0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/                       1352   0.0
CFC760 (CFC760Q) /CSM/CF/CFC7-C/CFC760Q.Seq.d/                       1352   0.0
SFJ795 (SFJ795Q) /CSM/SF/SFJ7-D/SFJ795Q.Seq.d/                       1346   0.0
AFD453 (AFD453Q) /CSM/AF/AFD4-C/AFD453Q.Seq.d/                       1346   0.0
SFL394 (SFL394Q) /CSM/SF/SFL3-D/SFL394Q.Seq.d/                       1344   0.0
CHB577 (CHB577Q) /CSM/CH/CHB5-D/CHB577Q.Seq.d/                       1344   0.0
own update 2002.10. 8
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL408803|AL408803.1 T3 end of clone AV0AA010G06 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    54   9e-10  3
AJ005836|AJ005836.1 Cicer arietinum mRNA for GDP dissociation inhibitor (gdi).    38   6e-08  4
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-07  2
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    62   1e-07  2
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   4e-07  2
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   5e-07  2
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   5e-07  2
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   5e-07  2
BZ296562|BZ296562.1 CG2922.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG2922, DNA sequence.    66   7e-07  1
CA258468|CA258468.1 SCCCRT3007F10.g RT3 Saccharum officinarum cDNA clone SCCCRT3007F10 5', mRNA sequence.    60   3e-06  2
dna update 2003.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09...   268   1e-70
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ...   268   1e-70
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ...   265   1e-69
AY086920_1(AY086920|pid:none) Arabidopsis thaliana clone 29536 m...   263   5e-69
AC004005_24(AC004005|pid:none) Arabidopsis thaliana chromosome 2...   262   6e-69
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   259   5e-68
BC095329_1(BC095329|pid:none) Danio rerio GDP dissociation inhib...   258   1e-67
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia...   258   2e-67
AJ401079_1(AJ401079|pid:none) Lycopersicon esculentum partial mR...   258   2e-67
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   258   2e-67
protein update 2009. 5.23
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.04
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SFE141 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFE141Z
3' end seq. 
>SFE141Z.Seq
----------CCATACATTTATCCATTATATGGTTTAGGTGAATTACCACAAGCATTTGC
CCGTTTATCTGCTATCTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATATTGT
TTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTGA
TAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTAT
TCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAAGAAATTTGAATCACT
CCAAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTAT
GTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCACTGT
TGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAATTCA
AGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGACAA
TGTTTTCATCTCAAAATCATATGATGCTACCTCTCACTTTGAAACCACTTGTGAAGATGT
CATGGATATGTACAAGAGAATCACTGGTAAAGATTTAGTTCTCACTGTTCATCCAAATAT
TCTTAAACAACAAGAAGAAGCGGTAACCAAGAACAAGAAG
Length of 3' end seq. 690
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -