SFE110
Library SF
(Link to library)
Clone ID SFE110
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFE110P
(Link to Original site)
Representative DNA sequence
>SFE110 (SFE110Q) /CSM/SF/SFE1-A/SFE110Q.Seq.d/
TTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGAAAGAAACCGCTGAAG
CTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTATTTCAATGATA
GTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAAATGTTCAACGTATTA
TTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTGGTGAAA
AGAATATTTTAATTTTCGATTTAGGTGGTGGTACATTTGATGTTTCTCTCCTTACCATTG
AAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATTTAGGTGGTGAAGATT
TTGATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTAAACATAAAAAAGATA
TTATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCAAAAGAA
CTCTTTCATCATCTGCTCAAGCTTCAATTGAAATTGATTCACTCTTTGAAGGTATTGATT
TCTATACTTCAATTACTAGAGCACGTTTTGAAGAACTCTGTGCTGATCTTTTCCXXXXXX
XXXXAAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTATTAATTCAAGT
TTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTC
TGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGC
AAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTAC
AATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGC
AGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATT
GGAAAATTATGCATTCACTGTTAAAAATTCAATTAAGATGAAAAAGTTGCAGCCAAAATT
TCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAA
TCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTT
GTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATG
CCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGAT
TGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGT
TAGTAAAATCAATAAAGCTTCTCATATAAGGACACA
sequence update 2001. 6. 1
Translated Amino Acid sequence
FSPEEISSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKLNVQRII
NEPTAAAIAYGLEKKGSGEKNILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDF
DNRLVSHFVDEFKRKHKKDIMGNQRAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDF
YTSITRARFEELCADLF---

---KTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDV
DANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKN
KLENYAFTVKNSIKMKKLQPKFQIQINQLLNLKLKVYSNG*nqikpqkrmnmkir*kp*k
qlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk*
*vskinkashirt


Translated Amino Acid sequence (All Frames)
Frame A:
fshqkkslqwys*k*kkplklilvkpliml*lpfqlismivnvkqpkmlvqfqn*mfnvl
lmnqllllllmv*krkvlvkrif*fsi*vvvhlmflslplkmvylklkpplvili*vvki
liivsfltllmnlnvnikkilwvinvlfvv*ellvnvpkelfhhllklqlklihslkvli
silqllehvlknsvlifs---

---KTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDV
DANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKN
KLENYAFTVKNSIKMKKLQPKFQIQINQLLNLKLKVYSNG*nqikpqkrmnmkir*kp*k
qlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk*
*vskinkashirt

Frame B:
fltrrnlfngtlknernr*slsw*nh**ccnyrsslfq**stssnqrcwynfkikcstyy
**tncccyclwfrkerfw*keyfnfrfrwwyi*cfspyh*rwci*s*shrw*ysfrw*rf
**ssrfslc**i*t*t*kryyg*stccssfkncl*tcqknsfiicssfn*n*ftl*ry*f
lyfny*stf*rtlc*sf---

---klkpslhtliinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlml
mqmvs*myqlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqri
nwkimhsllkiqlr*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrs
scqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflknn
klvksiklli*gh

Frame C:
FSPEEISSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKLNVQRII
NEPTAAAIAYGLEKKGSGEKNILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDF
DNRLVSHFVDEFKRKHKKDIMGNQRAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDF
YTSITRARFEELCADLF---

---nsnllyil**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*
ckwylkcis*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*
igklcihc*kfn*dekvaakisdsdkstiesetesvlkwlesnqtaekdeyedkmkalea
vvnpimsklyqeggmpqgggmpggmsndspkssnnkvdeld*rnfseenisik*is*kii
s**nq*sfsykdt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFE110 (SFE110Q) /CSM/SF/SFE1-A/SFE110Q.Seq.d/ 2629 0.0
VFG861 (VFG861Q) /CSM/VF/VFG8-C/VFG861Q.Seq.d/ 1465 0.0
CFC503 (CFC503Q) /CSM/CF/CFC5-A/CFC503Q.Seq.d/ 1465 0.0
VFN458 (VFN458Q) /CSM/VF/VFN4-C/VFN458Q.Seq.d/ 1463 0.0
CFJ639 (CFJ639Q) /CSM/CF/CFJ6-B/CFJ639Q.Seq.d/ 1463 0.0
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/ 1461 0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/ 1461 0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/ 1461 0.0
VHP236 (VHP236Q) /CSM/VH/VHP2-B/VHP236Q.Seq.d/ 1461 0.0
VHP224 (VHP224Q) /CSM/VH/VHP2-A/VHP224Q.Seq.d/ 1461 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 1154 0.0 2
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 1154 0.0 2
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds. 226 0.0 8
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 226 0.0 12
AX536934|AX536934.1 Sequence 535 from Patent WO02064766. 133 e-135 10
AF278536|AF278536.1 Parastrongyloides trichosuri heat shock 70 protein gene, complete cds. 157 e-135 9
A58313|A58313.1 Sequence 1 from Patent WO9636707. 133 e-134 10
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70. 133 e-133 10
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein 70. 100 e-106 9
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds. 100 e-106 9
dna update 2003.12.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB170103_1(AB170103|pid:none) Macaca fascicularis brain cDNA clo... 324 e-155
(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 385 e-105
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 383 e-105
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 370 e-101
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 367 e-100
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 351 3e-95
AY582833_1(AY582833|pid:none) Chytriomyces confervae strain CBS ... 348 2e-94
EF190213_1(EF190213|pid:none) Dendrolimus punctatus heat shock p... 347 7e-94
EF194276_1(EF194276|pid:none) Dendrolimus superans heat shock pr... 347 7e-94
EF190212_1(EF190212|pid:none) Dendrolimus tabulaeformis heat sho... 347 7e-94
protein update 2009. 5.23
PSORT

psg: 0.75 gvh: 0.33 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.14 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: plasma membrane

>> prediction for SFE110 is nuc

5' end seq. ID SFE110F
5' end seq.
>SFE110F.Seq
TTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGAAAGAAACCGCTGAAG
CTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTATTTCAATGATA
GTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAAATGTTCAACGTATTA
TTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTGGTGAAA
AGAATATTTTAATTTTCGATTTAGGTGGTGGTACATTTGATGTTTCTCTCCTTACCATTG
AAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATTTAGGTGGTGAAGATT
TTGATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTAAACATAAAAAAGATA
TTATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCAAAAGAA
CTCTTTCATCATCTGCTCAAGCTTCAATTGAAATTGATTCACTCTTTGAAGGTATTGATT
TCTATACTTCAATTACTAGAGCACGTTTTGAAGAACTCTGTGCTGATCTTTTCC------
----
Length of 5' end seq. 594
3' end seq. ID SFE110Z
3' end seq.
>SFE110Z.Seq
----------AAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTATTAAT
TCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGA
ACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGT
TGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAA
GATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGC
TGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAA
TAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAGATGAAAAAGTTGCAGCC
AAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGG
TTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAA
GCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGT
GGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAA
TTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATA
ATAAGTTAGTAAAATCAATAAAGCTTCTCATATAAGGACACA
Length of 3' end seq. 752
Connected seq. ID SFE110P
Connected seq.
>SFE110P.Seq
TTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGAAAGAAACCGCTGAAG
CTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTATTTCAATGATA
GTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAAATGTTCAACGTATTA
TTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTGGTGAAA
AGAATATTTTAATTTTCGATTTAGGTGGTGGTACATTTGATGTTTCTCTCCTTACCATTG
AAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATTTAGGTGGTGAAGATT
TTGATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTAAACATAAAAAAGATA
TTATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCAAAAGAA
CTCTTTCATCATCTGCTCAAGCTTCAATTGAAATTGATTCACTCTTTGAAGGTATTGATT
TCTATACTTCAATTACTAGAGCACGTTTTGAAGAACTCTGTGCTGATCTTTTCC------
----AAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTATTAATTCAAGT
TTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTC
TGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGC
AAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTAC
AATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGC
AGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATT
GGAAAATTATGCATTCACTGTTAAAAATTCAATTAAGATGAAAAAGTTGCAGCCAAAATT
TCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAA
TCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTT
GTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATG
CCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGAT
TGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGT
TAGTAAAATCAATAAAGCTTCTCATATAAGGACACA
Length of connected seq. 1346
Full length Seq ID -
Full length Seq. -
Length of full length seq. -