SFE107
Library SF
(Link to library)
Clone ID SFE107
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID SFE107P
(Link to Original site)
Representative DNA sequence
>SFE107 (SFE107Q) /CSM/SF/SFE1-A/SFE107Q.Seq.d/
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGTXXXXXXXXXXATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGG
TAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGT
CGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAA
ACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGG
TGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGA
ATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCC
AGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGT
TTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTT
GGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGC
TACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATA
TGGTGTAATCTCTATGTGTATGGTACGGCTTAGGTGCTGCAGGCTGTTGTTCGTACAGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
YIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKR
GAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPK
EVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDP
IISG---

---SHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKE
GGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIP
AALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQ
MATISRELHRRKGKYGVISMCMVRLRCCRLLFVQ


Translated Amino Acid sequence (All Frames)
Frame A:
iynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*k
rsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrftk
gstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgcprgs
nh*w---

---ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkvsvrkpplqiwpn*nqlsk
rvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*llllsvsnhplwvlvqplqf
qpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkliqmalvsl*vih*vllvpv
kwlpfqenyivvkvnmv*slcvwyglgaagccsyr

Frame B:
YIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKR
GAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPK
EVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDP
IISG---

---ftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrryp*enhrcrfgqiktsfqr
gwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfcccrcrtihygywssrcns
srlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*skwlwyrfrssircywcps
ngyhfkritss*r*iwcnlyvygta*vlqavvrtd

Frame C:
i*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklke
ehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvyqr
kyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkriq
slv---

---SHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKE
GGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIP
AALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQ
MATISRELHRRKGKYGVISMCMVRLRCCRLLFVQ

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFE107 (SFE107Q) /CSM/SF/SFE1-A/SFE107Q.Seq.d/ 2319 0.0
VFL724 (VFL724Q) /CSM/VF/VFL7-A/VFL724Q.Seq.d/ 1247 0.0
VFK696 (VFK696Q) /CSM/VF/VFK6-D/VFK696Q.Seq.d/ 1247 0.0
CFF140 (CFF140Q) /CSM/CF/CFF1-B/CFF140Q.Seq.d/ 1247 0.0
VSH806 (VSH806Q) /CSM/VS/VSH8-A/VSH806Q.Seq.d/ 1245 0.0
SFI740 (SFI740Q) /CSM/SF/SFI7-B/SFI740Q.Seq.d/ 1245 0.0
SFB522 (SFB522Q) /CSM/SF/SFB5-A/SFB522Q.Seq.d/ 1245 0.0
CHB576 (CHB576Q) /CSM/CH/CHB5-D/CHB576Q.Seq.d/ 1245 0.0
CFC557 (CFC557Q) /CSM/CF/CFC5-C/CFC557Q.Seq.d/ 1243 0.0
SFD851 (SFD851Q) /CSM/SF/SFD8-C/SFD851Q.Seq.d/ 1239 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1185 0.0 8
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence. 40 1e-15 6
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence. 40 6e-12 5
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence. 60 5e-11 4
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09. 44 3e-10 4
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence. 60 2e-09 3
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence. 68 2e-08 2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence. 68 2e-08 2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence. 68 3e-08 2
CF609274|CF609274.1 INFIO01_000052 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence. 56 5e-08 3
dna update 2003.12.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 687 0.0
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket... 370 e-101
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698.... 370 e-101
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu... 369 e-100
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3... 368 e-100
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C... 367 e-100
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM... 367 e-100
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur... 365 2e-99
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789. 365 2e-99
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15... 364 3e-99
protein update 2009. 5.23
PSORT

psg: 0.61 gvh: 0.40 alm: 0.28 top: 0.33 tms: 0.07 mit: 0.35 mip: 0.05
nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
20.0 %: mitochondrial
20.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SFE107 is nuc

5' end seq. ID SFE107F
5' end seq.
>SFE107F.Seq
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGT----------
Length of 5' end seq. 553
3' end seq. ID SFE107Z
3' end seq.
>SFE107Z.Seq
----------ATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGAT
GAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGAC
GAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAA
GAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGT
TTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTA
GCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATT
CCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAAT
GAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAA
GTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGT
CAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTCT
ATGTGTATGGTACGGCTTAGGTGCTGCAGGCTGTTGTTCGTACAGAT
Length of 3' end seq. 637
Connected seq. ID SFE107P
Connected seq.
>SFE107P.Seq
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGT----------ATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGG
TAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGT
CGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAA
ACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGG
TGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGA
ATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCC
AGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGT
TTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTT
GGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGC
TACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATA
TGGTGTAATCTCTATGTGTATGGTACGGCTTAGGTGCTGCAGGCTGTTGTTCGTACAGAT
Length of connected seq. 1190
Full length Seq ID -
Full length Seq. -
Length of full length seq. -