>SFD888 (SFD888Q) /CSM/SF/SFD8-D/SFD888Q.Seq.d/
XXXXXXXXXXGGTGCACTCTCACTCAAAGAGATTAACCAATTCATTCTTGATGAATGTGA
TACCATGCTCGAATCATTGGATATGAGAAAGGATGTACAAAAGATCTTCAAACTCATCCC
AGCCAACAAACAAGTTATGATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTG
TAAGAAGTTTATGAACAATCCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCT
CCATGGTCTTCAACAATACTACGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCAT
TGAACTCTTGGATTCATTAGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACG
TGCTGATGCCTTAAATAAGATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCG
TGACCTCGATCAAAAGGATCGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCG
TATCATGGTTGCCACTAATATCTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGT
CATCAACTACGATATGGCTGAATCTGCCGATACCT

---ALSLKEINQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICK
KFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRA
DALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVI
NYDMAESADT

Frame A:
---vhshskrltnsflmnvipcsnhwi*ermykrssnssqptnkl*cfqlpslipfvqsv
rsl*tihwkstsmmvvnslsmvfnnttyqslknkriknslnswih*tlikplfssnlldv
lmp*irsskilvshpsvfivtsikrivsnntvnsktlnlvswlplislvvvsilnvsmss
sttiwlnlpip


Frame B:
---ctltqrd*pihs**m*yhariigyekgctkdlqthpsqqtsydvfsypl*yhssnl*
evyeqsignlhq*w**thspwsstilrtnh*rtke*kth*tlgfirl*ssryfrqic*tc
*clk*dpprywfpihlyss*prskgsyrtip*iqkl*isyhgch*ylwswyry*tcqcrh
qlryg*icry


Frame C:
---ALSLKEINQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICK
KFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRA
DALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVI
NYDMAESADT

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD888 (SFD888Q) /CSM/SF/SFD8-D/SFD888Q.Seq.d/                       1120   0.0
AFE253 (AFE253Q) /CSM/AF/AFE2-C/AFE253Q.Seq.d/                       1114   0.0
VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/                       1112   0.0
FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/                     1112   0.0
AFJ621 (AFJ621Q) /CSM/AF/AFJ6-A/AFJ621Q.Seq.d/                       1112   0.0
AFG357 (AFG357Q) /CSM/AF/AFG3-C/AFG357Q.Seq.d/                       1112   0.0
CFK190 (CFK190Q) /CSM/CF/CFK1-D/CFK190Q.Seq.d/                       1106   0.0
SFD645 (SFD645Q) /CSM/SF/SFD6-B/SFD645Q.Seq.d/                       1104   0.0
AFN644 (AFN644Q) /CSM/AF/AFN6-B/AFN644Q.Seq.d/                       1104   0.0
AFJ724 (AFJ724Q) /CSM/AF/AFJ7-A/AFJ724Q.Seq.d/                       1104   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AW759959|AW759959.1 sl56c07.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-5317 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence.    56   8e-10  2
BF071471|BF071471.1 st59b09.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-857 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence.    56   8e-10  2
AL408654|AL408654.1 T7 end of clone AV0AA009H09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    38   1e-09  4
AX488925|AX488925.1 Sequence 6225 from Patent WO02053728.          40   2e-09  5
CA251168|CA251168.1 SCQSFL1122D07.g FL1 Saccharum officinarum cDNA clone SCQSFL1122D07 5', mRNA sequence.    48   8e-09  3
BQ826216|0    44   9e-09  3
CA169742|CA169742.1 SCQGSB1066A04.g SB1 Saccharum officinarum cDNA clone SCQGSB1066A04 5', mRNA sequence.    48   1e-08  3
CA201831|CA201831.1 SCRLFL1008H03.g FL1 Saccharum officinarum cDNA clone SCRLFL1008H03 5', mRNA sequence.    48   1e-08  3
BI974435|BI974435.1 saj01e10.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9068 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence.    52   1e-08  2
CA252463|CA252463.1 SCVPFL1138E12.g FL1 Saccharum officinarum cDNA clone SCVPFL1138E12 5', mRNA sequence.    48   1e-08  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD...   257   2e-67
GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235.      256   4e-67
GM694505_1(GM694505|pid:none) Sequence 61 from Patent EP1953235....   255   5e-67
BT068295_1(BT068295|pid:none) Zea mays full-length cDNA clone ZM...   255   7e-67
EU963228_1(EU963228|pid:none) Zea mays clone 259532 spliceosome ...   254   1e-66
(O13792) RecName: Full=ATP-dependent RNA helicase uap56;        ...   254   1e-66
D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia...   254   1e-66
(Q56XG6) RecName: Full=DEAD-box ATP-dependent RNA helicase 15;  ...   253   2e-66
AJ428513_1(AJ428513|pid:none) Chironomus tentans mRNA for HEL pr...   253   2e-66
AL360314_6(AL360314|pid:none) Arabidopsis thaliana DNA chromosom...   253   2e-66

 psg: 0.61  gvh: 0.46  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: vacuolar

>> prediction for SFD888 is cyt

>SFD888Z.Seq
----------GGTGCACTCTCACTCAAAGAGATTAACCAATTCATTCTTGATGAATGTGA
TACCATGCTCGAATCATTGGATATGAGAAAGGATGTACAAAAGATCTTCAAACTCATCCC
AGCCAACAAACAAGTTATGATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTG
TAAGAAGTTTATGAACAATCCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCT
CCATGGTCTTCAACAATACTACGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCAT
TGAACTCTTGGATTCATTAGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACG
TGCTGATGCCTTAAATAAGATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCG
TGACCTCGATCAAAAGGATCGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCG
TATCATGGTTGCCACTAATATCTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGT
CATCAACTACGATATGGCTGAATCTGCCGATACCT