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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD878
Library SF
(Link to library)
Clone ID SFD878
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16394-1
Original site URL
Representative seq. ID SFD878P
(Link to Original site)
Representative DNA sequence 
>SFD878 (SFD878Q) /CSM/SF/SFD8-D/SFD878Q.Seq.d/
AATATACAAAACAAAATAAAAACAAAACAAAACAAAACAAATAAAATGACAATCTTAGGT
TCAATCTCTTCAATTGGTAATGTTAAATTAATTTCAAAATCAAATAATTTATCATCATTA
TCAAATTCATCATCTTCTTTACAATCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGA
AATGGAGGATTACTCGGTGGAGTTGGTGGTCTCGTTGGTGGAGTTCTTGTTGGTACTGGT
GTAATTGTTGGTTCTGTTTTACACGGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAAT
TGTGGTTGTAATTAAAATTAAAAAATTATAAATATATATTAAATAAATTAAAAATAAACA
AAGTTTAATTATTTGTAAATGTAAAAAAAAAAXXXXXXXXXXAATATACAAAACAAAATA
AAAACAAAACAAAACAAAACAAATAAAATGACAATCTTAGGTTCAATCTCTTCAATTGGT
AATGTTAAATTAATTTCAAAATCAAATAATTTATCATCATTATCAAATTCATCATCTTCT
TTACAATCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGAAATGGAGGATTACTCGGT
GGAGTTGGTGGTCTCGTTGGTGGAGTTCTTGTTGGTACTGGTGTAATTGTTGGTTCTGTT
TTACACGGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGTTGTAATTAAAAT
TAAAAAATTATAAATATATATTAAATAAATTAAAAATAAACAAAGTTTAATTATTTGTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iyktk*kqnktkqik*qs*vqslqlvmln*fqnqiiyhhyqihhllynq*iqfnvvvvve
medysvelvvslvefllvlv*llvlfytesvpf*levqtivvvikikkl*iyik*IKNKQ
SLIICKCKKK---

---NIQNKIKTKQNKTNKMTILGSISSIGNVKLISKSNNLSSLSNSSSSLQSMNSIQCGG
GCGNGGLLGGVGGLVGGVLVGTGVIVGSVLHGVGSILTGGSNNCGCN*n*kiiniy*in*
k*tkfnyl*
Translated Amino Acid sequence (All Frames) 
Frame A:
niqnkiktkqnktnkmtilgsissignvklisksnnlsslsnsssslqsmnsiqcgggcg
nggllggvgglvggvlvgtgvivgsvlhgvgsiltggsnncgcn*n*kiiniy*in*k*t
kfnyl*m*kk---

---NIQNKIKTKQNKTNKMTILGSISSIGNVKLISKSNNLSSLSNSSSSLQSMNSIQCGG
GCGNGGLLGGVGGLVGGVLVGTGVIVGSVLHGVGSILTGGSNNCGCN*n*kiiniy*in*
k*tkfnyl*

Frame B:
iyktk*kqnktkqik*qs*vqslqlvmln*fqnqiiyhhyqihhllynq*iqfnvvvvve
medysvelvvslvefllvlv*llvlfytesvpf*levqtivvvikikkl*iyik*IKNKQ
SLIICKCKKK---

---iyktk*kqnktkqik*qs*vqslqlvmln*fqnqiiyhhyqihhllynq*iqfnvvv
vvemedysvelvvslvefllvlv*llvlfytesvpf*levqtivvvikikkl*iyik*ik
nkqsliic

Frame C:
ytkqnknktkqnk*ndnlrfnlfnw*c*infkik*fiiiikfiifftinefnsmwwwlwk
writrwswwsrwwsscwywcncwfcftrsrfhfnwrfkqlwl*lklknykyilnklkink
v*lfvnvkkk---

---ytkqnknktkqnk*ndnlrfnlfnw*c*infkik*fiiiikfiifftinefnsmwww
lwkwritrwswwsrwwsscwywcncwfcftrsrfhfnwrfkqlwl*lklknykyilnklk
inkv*lfv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC296 (SHC296Q) /CSM/SH/SHC2-D/SHC296Q.Seq.d/                        519   e-146
SFD878 (SFD878Q) /CSM/SF/SFD8-D/SFD878Q.Seq.d/                        519   e-146
SSK408 (SSK408Q) /CSM/SS/SSK4-A/SSK408Q.Seq.d/                        448   e-125
SSG182 (SSG182Q) /CSM/SS/SSG1-D/SSG182Q.Seq.d/                        448   e-125
SSF364 (SSF364Q) /CSM/SS/SSF3-C/SSF364Q.Seq.d/                        448   e-125
SSE490 (SSE490Q) /CSM/SS/SSE4-D/SSE490Q.Seq.d/                        448   e-125
SSC402 (SSC402Q) /CSM/SS/SSC4-A/SSC402Q.Seq.d/                        448   e-125
SSB740 (SSB740Q) /CSM/SS/SSB7-B/SSB740Q.Seq.d/                        448   e-125
SSG677 (SSG677Q) /CSM/SS/SSG6-D/SSG677Q.Seq.d/                        442   e-123
SSK883 (SSK883Q) /CSM/SS/SSK8-D/SSK883Q.Seq.d/                        440   e-122
own update 2004. 8.22
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   502   0.0    12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   315   e-129  20
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   119   5e-73  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   5e-11  19
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   2e-09  17
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    34   4e-06  14
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    32   1e-05  11
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   2e-05  16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   5e-05  18
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    44   9e-05  13
dna update 2003.12.23
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 358,336,962
protein update 2009. 5.23
PSORT 

 psg: 0.39  gvh: 0.47  alm: 0.26  top: 0.43  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFD878 is nuc
5' end seq. ID SFD878F
5' end seq. 
>SFD878F.Seq
AATATACAAAACAAAATAAAAACAAAACAAAACAAAACAAATAAAATGACAATCTTAGGT
TCAATCTCTTCAATTGGTAATGTTAAATTAATTTCAAAATCAAATAATTTATCATCATTA
TCAAATTCATCATCTTCTTTACAATCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGA
AATGGAGGATTACTCGGTGGAGTTGGTGGTCTCGTTGGTGGAGTTCTTGTTGGTACTGGT
GTAATTGTTGGTTCTGTTTTACACGGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAAT
TGTGGTTGTAATTAAAATTAAAAAATTATAAATATATATTAAATAAATTAAAAATAAACA
AAGTTTAATTATTTGTAAATGTAAAAAAAAAA----------
Length of 5' end seq. 392
3' end seq. ID SFD878Z
3' end seq. 
>SFD878Z.Seq
----------AATATACAAAACAAAATAAAAACAAAACAAAACAAAACAAATAAAATGAC
AATCTTAGGTTCAATCTCTTCAATTGGTAATGTTAAATTAATTTCAAAATCAAATAATTT
ATCATCATTATCAAATTCATCATCTTCTTTACAATCAATGAATTCAATTCAATGTGGTGG
TGGTTGTGGAAATGGAGGATTACTCGGTGGAGTTGGTGGTCTCGTTGGTGGAGTTCTTGT
TGGTACTGGTGTAATTGTTGGTTCTGTTTTACACGGAGTCGGTTCCATTTTAACTGGAGG
TTCAAACAATTGTGGTTGTAATTAAAATTAAAAAATTATAAATATATATTAAATAAATTA
AAAATAAACAAAGTTTAATTATTTGTAA
Length of 3' end seq. 378
Connected seq. ID SFD878P
Connected seq. 
>SFD878P.Seq
AATATACAAAACAAAATAAAAACAAAACAAAACAAAACAAATAAAATGACAATCTTAGGT
TCAATCTCTTCAATTGGTAATGTTAAATTAATTTCAAAATCAAATAATTTATCATCATTA
TCAAATTCATCATCTTCTTTACAATCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGA
AATGGAGGATTACTCGGTGGAGTTGGTGGTCTCGTTGGTGGAGTTCTTGTTGGTACTGGT
GTAATTGTTGGTTCTGTTTTACACGGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAAT
TGTGGTTGTAATTAAAATTAAAAAATTATAAATATATATTAAATAAATTAAAAATAAACA
AAGTTTAATTATTTGTAAATGTAAAAAAAAAA----------AATATACAAAACAAAATA
AAAACAAAACAAAACAAAACAAATAAAATGACAATCTTAGGTTCAATCTCTTCAATTGGT
AATGTTAAATTAATTTCAAAATCAAATAATTTATCATCATTATCAAATTCATCATCTTCT
TTACAATCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGAAATGGAGGATTACTCGGT
GGAGTTGGTGGTCTCGTTGGTGGAGTTCTTGTTGGTACTGGTGTAATTGTTGGTTCTGTT
TTACACGGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGTTGTAATTAAAAT
TAAAAAATTATAAATATATATTAAATAAATTAAAAATAAACAAAGTTTAATTATTTGTAA
Length of connected seq. 770
Full length Seq ID -
Full length Seq. -
Length of full length seq. -