SFD793 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFD793
Library	SF (Link to library)
Clone ID	SFD793 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16255-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFD7-D/SFD793Q.Seq.d/
Representative seq. ID	SFD793P (Link to Original site)
Representative DNA sequence	>SFD793 (SFD793Q) /CSM/SF/SFD7-D/SFD793Q.Seq.d/ AAGTAAAATTTCATGTAAAAAGGATCCTCAAGGTAATATTTATGAATTTTGGAGTAGTTG TACACCAAGTAGTGGTTTCACAGATTTTATTCCATCCAATGCAACATGTTCATCATTAAA TTGTAATGCTCAACAAATGAGTTGCAAATATGTTCAACAAGCATGTCATGAAACATCATG TTGTCCTGATATTCCTCAATGTCAAATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAG TGCAACTGGTCAAGGCACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCC AAATGGTTACATTTGTACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTC TTCGTCAAGTTCTTCATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGG CTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAAC CACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGG TTCAACTACTGGTCCAACATGTGGTAATGTTAACTGCCCAAGAGGTTACCATTGTGAAGT TAGAGGTTCCCAAGCTGTTTGTGTTGCCGATGAATTTGACTCATGTGCCAATGTTGATTG XXXXXXXXXXGCAATTACACCCCAGAACATTGTGGCGGACGTCCAAATAAGATTAAAGTC ATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTTCAATGTCCAAAAGGTTACAAA TGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAAAATGTCTCACT TGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACTCCACAAAAGAAG ACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCGCA TCCACTATTGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCTCA TTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGAT GAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGT GATAATGATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAA GATTTCAATGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGAT TTCGAAGAAGAATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAA TAATTTAATAACTAATCATTATCATCAAAATAACATTAT
sequence update	2001. 6. 1
Translated Amino Acid sequence	SKISCKKDPQGNIYEFWSSCTPSSGFTDFIPSNATCSSLNCNAQQMSCKYVQQACHETSC CPDIPQCQIPATGGGPATGSATGQGTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSS SSSSSSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGG STTGPTCGNVNCPRGYHCEVRGSQAVCVADEFDSCANVD--- ---NYTPEHCGGRPNKIKVICVPSPKGTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLTC KDMHCESNGLLCVLTPQKKTDEECCPIIPICINPSTIAASTIATTTASTRHSTASTIASL VTGTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDED FNGNDEFEIDVEGDFQEDDFEEEYAFYiklffikk**fnnslssk*hy
Translated Amino Acid sequence (All Frames)	Frame A: knfmkgssrylilelytkwfhrfysiqcnmfiiklcstnelqicstsmsnim lsyssmsnscnwrwpsywkcnwsrhirwytrflslskwlhlynsksissmcfsiil fvkffinhwltyyhwwfnhwltyyywwfnhwltyyywwfnhwltyyywwfnhwltyyyww fnywsnmwclpkrlplsrfpsclccrilmcqcl--- ---aitpqnivadvqirlkssvfhhqkvlarlfnvqkvtnansmlmvqhvrlknqnvsl vkicivsqmdysvslhkrrlmknvvqlfqsvsihqllphpllplqlhqlvtqlpqqlph slvpqvvvvvwvhlvvdpmknqviqmlylvslktifsgvimmntlvittvmlmkkilmk ismvmmnlklmlkviskkmiskknmhfiklnffsknnnnnlitnhyhqnni Frame B: SKISCKKDPQGNIYEFWSSCTPSSGFTDFIPSNATCSSLNCNAQQMSCKYVQQACHETSC CPDIPQCQIPATGGGPATGSATGQGTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSS SSSSSSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSTTGSHTTTGG STTGPTCGNVNCPRGYHCEVRGSQAVCVADEFDSCANVD--- ---qlhprtlwrtskdshlcsitkrylqdcsmskrlqmqtlcwsnmckdktkmshl ryalvkwitlcldstkedrmlsnysnlyqsinycrihychyncinsslnclnncli shwyhkwwwwygfiwwsirrikskcytwslrryflg**illplcrryr fqw*incrfprrfrrricillntffhkkiiiiiliiiikitl Frame C: vkfhvkrilkvifmnfgvvvhqvvvsqilfhpmqhvhhivmlnkvanmfnkhvmkhhv vliflnvkflqlavaqllevqlvkahqvvhqvlviklivqmvtfvqinqyvflhhpl rqvlhqplahilplvvqplahilllvvqplahilllvvqplahilllvvqplahilllvv qllvqhvvmltaqevtivklevpklfvlpmnlthvpmli--- ---NYTPEHCGGRPNKIKVICVPSPKGTCKTVQCPKGYKCKLYADGPTCVKIEKPKCLTC KDMHCESNGLLCVLTPQKKTDEECCPIIPICINPSTIAASTIATTTASTRHSTASTIASL VTGTTSGGGGMGSFGGRSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDED FNGNDEFEIDVEGDFQEDDFEEEYAFYiklffikk**fnnslssk*hy
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFD793 (SFD793Q) /CSM/SF/SFD7-D/SFD793Q.Seq.d/ 2484 0.0 AFA174 (AFA174Q) /CSM/AF/AFA1-D/AFA174Q.Seq.d/ 1215 0.0 SLE232 (SLE232Q) /CSM/SL/SLE2-B/SLE232Q.Seq.d/ 1209 0.0 CFC855 (CFC855Q) /CSM/CF/CFC8-C/CFC855Q.Seq.d/ 1209 0.0 CHO135 (CHO135Q) /CSM/CH/CHO1-B/CHO135Q.Seq.d/ 1207 0.0 SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 1199 0.0 SSC714 (SSC714Q) /CSM/SS/SSC7-A/SSC714Q.Seq.d/ 1199 0.0 SLA758 (SLA758Q) /CSM/SL/SLA7-C/SLA758Q.Seq.d/ 1199 0.0 SFH118 (SFH118Q) /CSM/SF/SFH1-A/SFH118Q.Seq.d/ 1199 0.0 SFF843 (SFF843Q) /CSM/SF/SFF8-B/SFF843Q.Seq.d/ 1199 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N M26238\|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds. 1306 0.0 3 AC115584\|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 1291 0.0 11 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 44 5e-06 14 X16491\|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96. 34 6e-06 3 AC136724\|AC136724.4 Mus musculus clone RP23-65F24, WORKING DRAFT SEQUENCE, 13 unordered pieces. 28 1e-05 4 AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 0.002 12 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 0.005 14 AC116988\|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 0.066 16 AE014851\|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence. 50 0.081 1 AC005140\|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, * SEQUENCING IN PROGRESS *, 4 unordered pieces. 50 0.081 1
dna update	2003.12.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 268 2e-72 B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid... 134 1e-36 (Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 77 2e-12 D13973_1(D13973\|pid:none) Dictyostelium discoideum gene for Dp87... 77 2e-12 S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 60 8e-11 (P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 60 8e-11 (Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 62 6e-08 CP001574_180(CP001574\|pid:none) Micromonas sp. RCC299 chromosome... 60 1e-07 (P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 41 3e-06 S72639_1(S72639\|pid:none) PspB=prespore-specific gene {5' region... 41 3e-06
protein update	2009. 5.23
PSORT	psg: 0.65 gvh: 0.47 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 28.0 %: nuclear 16.0 %: mitochondrial 4.0 %: vacuolar >> prediction for SFD793 is cyt
5' end seq. ID	SFD793F
5' end seq.	>SFD793F.Seq AAGTAAAATTTCATGTAAAAAGGATCCTCAAGGTAATATTTATGAATTTTGGAGTAGTTG TACACCAAGTAGTGGTTTCACAGATTTTATTCCATCCAATGCAACATGTTCATCATTAAA TTGTAATGCTCAACAAATGAGTTGCAAATATGTTCAACAAGCATGTCATGAAACATCATG TTGTCCTGATATTCCTCAATGTCAAATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAG TGCAACTGGTCAAGGCACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCC AAATGGTTACATTTGTACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTC TTCGTCAAGTTCTTCATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGG CTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAAC CACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGG TTCAACTACTGGTCCAACATGTGGTAATGTTAACTGCCCAAGAGGTTACCATTGTGAAGT TAGAGGTTCCCAAGCTGTTTGTGTTGCCGATGAATTTGACTCATGTGCCAATGTTGATTG ----------
Length of 5' end seq.	660
3' end seq. ID	SFD793Z
3' end seq.	>SFD793Z.Seq ----------GCAATTACACCCCAGAACATTGTGGCGGACGTCCAAATAAGATTAAAGTC ATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTTCAATGTCCAAAAGGTTACAAA TGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAAAATGTCTCACT TGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACTCCACAAAAGAAG ACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCGCA TCCACTATTGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCTCA TTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGAT GAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGT GATAATGATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAA GATTTCAATGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGAT TTCGAAGAAGAATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAA TAATTTAATAACTAATCATTATCATCAAAATAACATTAT
Length of 3' end seq.	689
Connected seq. ID	SFD793P
Connected seq.	>SFD793P.Seq AAGTAAAATTTCATGTAAAAAGGATCCTCAAGGTAATATTTATGAATTTTGGAGTAGTTG TACACCAAGTAGTGGTTTCACAGATTTTATTCCATCCAATGCAACATGTTCATCATTAAA TTGTAATGCTCAACAAATGAGTTGCAAATATGTTCAACAAGCATGTCATGAAACATCATG TTGTCCTGATATTCCTCAATGTCAAATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAG TGCAACTGGTCAAGGCACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCC AAATGGTTACATTTGTACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTC TTCGTCAAGTTCTTCATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGG CTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAAC CACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGG TTCAACTACTGGTCCAACATGTGGTAATGTTAACTGCCCAAGAGGTTACCATTGTGAAGT TAGAGGTTCCCAAGCTGTTTGTGTTGCCGATGAATTTGACTCATGTGCCAATGTTGATTG ----------GCAATTACACCCCAGAACATTGTGGCGGACGTCCAAATAAGATTAAAGTC ATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTTCAATGTCCAAAAGGTTACAAA TGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAAAATGTCTCACT TGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACTCCACAAAAGAAG ACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCGCA TCCACTATTGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCTCA TTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGAT GAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGT GATAATGATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAA GATTTCAATGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGAT TTCGAAGAAGAATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAA TAATTTAATAACTAATCATTATCATCAAAATAACATTAT
Length of connected seq.	1349
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas