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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD617
Library SF
(Link to library)
Clone ID SFD617
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11649-1|Contig-U16366-1
Original site URL
Representative seq. ID SFD617P
(Link to Original site)
Representative DNA sequence 
>SFD617 (SFD617Q) /CSM/SF/SFD6-A/SFD617Q.Seq.d/
TTTAAGTGATCCAGAGAAGAGAAAGATGTACGATAGTTATGGTTCTGAAGGTATGAAGGA
GAGTGGTTTCCATGCATCATCAGCTGAAGACCTCTTCTCACATTTCTTTGGTGCAGGAGG
TGGCGGTGGTGGATTTAGTTTCGGAGGTGGTGGTGGTGATGATTTTGGTGGATTTAGTTT
TGGTAATATGGGAGGTATGGGCGGCATGGGTGGCATGGGTGGTGGNCACAAGANGAGANG
AANGGGTGANGATNTTGAACATGAANTGAAXXXXXXXXXXGGTGATGTAATCATTACAAT
TCGTGAGAAACCAAATGTAAATTTCAANANAAATGGTGATAATTTAATNTACNCCNAACG
TTTAAAATTNTTANACTCAATCGCTGGTAGTCNATTCATTATAAACCCNTTGGATCAACG
TAAACTTTGGGTCAATCATGANAAAGGTGATATAATTAAGCAAGGTGATATGCGTTACAT
ANANAATGAAGGTATGCCAATTAAAGGNACCTCTANAAAAGGTAAATTAATCATTGCTTT
TGATATTGAATATCCATCGAATNTTACAAATGATGATATTGAAAAACTCTNTAAAATCTT
ACCAAAAGCTGCCNCCCCTTNTGNTTCAAAATCTGATTGTAAANCGGTTGGTCTCTCAAA
GGTAAACTTTAANACCAACGAACAAAGTTCTCATGGTGGNGCNGGTGGTGCTTANCAACA
ACATGGTGGNGCTTATGGTCATCAAAAACAACNACAACAAGGTTTTAANCCTGCTGANTT
TGGNGCNCNATTTGGTGGTGGAGGACCANAANAANATTTCCAGAGCTATNATNAAATAAN
TTTATATAATAATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LSDPEKRKMYDSYGSEGMKESGFHASSAEDLFSHFFGAGGGGGGFSFGGGGGDDFGGFSF
GNMGGMGGMGGMGGGHKXRXXGXDXEHEX---

---GDVIITIREKPNVNFXXNGDNLXYXXRLKXLXSIAGSXFIINPLDQRKLWVNHXKGD
IIKQGDMRYIXNEGMPIKGTSXKGKLIIAFDIEYPSNXTNDDIEKLXKILPKAAXPXXSK
SDCKXVGLSKVNFXTNEQSSHGGAGGAXQQHGGAYGHQKQXQQGFXPAXFGAXFGGGGPX
XXFQSYXXIXLYNN
Translated Amino Acid sequence (All Frames) 
Frame A:
fk*sreekdvr*lwf*ryegewfpciis*rplltflwcrrwrwwi*frrwww**fwwi*f
w*ygrygrhgwhgwwxqxexxg*xx*t*xe---

---GDVIITIREKPNVNFXXNGDNLXYXXRLKXLXSIAGSXFIINPLDQRKLWVNHXKGD
IIKQGDMRYIXNEGMPIKGTSXKGKLIIAFDIEYPSNXTNDDIEKLXKILPKAAXPXXSK
SDCKXVGLSKVNFXTNEQSSHGGAGGAXQQHGGAYGHQKQXQQGFXPAXFGAXFGGGGPX
XXFQSYXXIXLYNN

Frame B:
LSDPEKRKMYDSYGSEGMKESGFHASSAEDLFSHFFGAGGGGGGFSFGGGGGDDFGGFSF
GNMGGMGGMGGMGGGHKXRXXGXDXEHEX---

---vm*slqfvrnqm*isxxmvii*xtpnv*nxxtqslvvxsl*txwinvnfgsimxkvi
*lskvicvtxxmkvcqlkxplxkvn*slllilnihrxlqmmilknsxksyqklpplxxqn
livxrlvsqr*tlxptnkvlmvxxvvlxnnmvxlmviknnxnkvlxllxlxxxlvvedxx
xisraxxk*xyiii

Frame C:
*viqrrerctivmvlkv*rrvvsmhhqlktsshislvqevavvdlvsevvvvmilvdlvl
viwevwaawvawvvxtrxxexvxxlnmx*---

---*cnhyns*etkckfqxkw**fnxxxtfkixxlnrw*sihykpxgst*tlgqs*xr*y
n*ar*yalhxx*ryan*rxlxkr*inhcf*y*isiexyk**y*ktl*nltkscxpxxfki
*l*xgwslkgkl*xqrtkfswwxxwclxttwwxlwsskttttrf*xc*xwxxiwwwrtxx
xfpelxxnxfi**f
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD617 (SFD617Q) /CSM/SF/SFD6-A/SFD617Q.Seq.d/                       1374   0.0
SLH333 (SLH333Q) /CSM/SL/SLH3-B/SLH333Q.Seq.d/                        841   0.0
SLE413 (SLE413Q) /CSM/SL/SLE4-A/SLE413Q.Seq.d/                        841   0.0
SLA810 (SLA810Q) /CSM/SL/SLA8-A/SLA810Q.Seq.d/                        841   0.0
CHC270 (CHC270Q) /CSM/CH/CHC2-C/CHC270Q.Seq.d/                        835   0.0
CFJ662 (CFJ662Q) /CSM/CF/CFJ6-C/CFJ662Q.Seq.d/                        835   0.0
SFE772 (SFE772Q) /CSM/SF/SFE7-C/SFE772Q.Seq.d/                        833   0.0
SFB251 (SFB251Q) /CSM/SF/SFB2-C/SFB251Q.Seq.d/                        821   0.0
CFD705 (CFD705Q) /CSM/CF/CFD7-A/CFD705Q.Seq.d/                        803   0.0
CFG324 (CFG324Q) /CSM/CF/CFG3-A/CFG324Q.Seq.d/                        799   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CB886540|CB886540.1 3529_1_96_1_D11.x_1 3529 - 2 mm ear tissue from Schmidt and Hake labs Zea mays cDNA, mRNA sequence.    60   5e-05  1
BH839185|BH839185.1 LMCR150009A03f Zea mays L. Zea mays genomic clone LMCR150009A03f, DNA sequence.    60   5e-05  1
BE345531|BE345531.1 946035F01.x1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence.    60   5e-05  1
CF051814|CF051814.1 QCM31a10.yg QCM Zea mays cDNA clone QCM31a10, mRNA sequence.    60   5e-05  1
CB886005|CB886005.1 3529_1_91_1_F03.y_1 3529 - 2 mm ear tissue from Schmidt and Hake labs Zea mays cDNA, mRNA sequence.    60   5e-05  1
CB886004|CB886004.1 3529_1_91_1_F03.x_1 3529 - 2 mm ear tissue from Schmidt and Hake labs Zea mays cDNA, mRNA sequence.    60   5e-05  1
CA408345|CA408345.1 3528_1_11_1_A02.x_1 3528 - Positive selection of MADS-box genes from ear library 946 Zea mays cDNA, mRNA sequence.    60   5e-05  1
BQ034993|BQ034993.1 1091011D06.x1 1091 - Immature ear with common ESTs screened by Schmidt lab Zea mays cDNA, mRNA sequence.    60   5e-05  1
AV917404|AV917404.1 Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDNA clone:bags18m10, 5' mRNA sequence.    60   5e-05  1
AV924435|AV924435.1 Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDNA clone:basd14i23, 5' mRNA sequence.    60   5e-05  1
dna update 2003.12.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ED3) RecName: Full=DnaJ homolog subfamily A member 1 homolog;     232   1e-59
AB264719_1(AB264719|pid:none) Papilio xuthus mRNA for similar to...    78   4e-13
L36113_1(L36113|pid:none) Arabidopsis thaliana chaperone protein...    75   2e-12
EU306561_1(EU306561|pid:none) Tigriopus japonicus heat shock pro...    75   2e-12
AE017342_435(AE017342|pid:none) Cryptococcus neoformans var. neo...    75   2e-12
(P42825) RecName: Full=Chaperone protein dnaJ 2;          Short=...    75   3e-12
AM920431_1008(AM920431|pid:none) Penicillium chrysogenum Wiscons...    74   8e-12
BT064347_1(BT064347|pid:none) Zea mays full-length cDNA clone ZM...    73   1e-11
(Q03363) RecName: Full=DnaJ protein homolog 1;          Short=DN...    72   2e-11
(P42824) RecName: Full=DnaJ protein homolog 2;  &S42031(S42031) ...    72   2e-11
protein update 2009. 5.23
PSORT 

 psg: 0.64  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SFD617 is nuc
5' end seq. ID SFD617F
5' end seq. 
>SFD617F.Seq
TTTAAGTGATCCAGAGAAGAGAAAGATGTACGATAGTTATGGTTCTGAAGGTATGAAGGA
GAGTGGTTTCCATGCATCATCAGCTGAAGACCTCTTCTCACATTTCTTTGGTGCAGGAGG
TGGCGGTGGTGGATTTAGTTTCGGAGGTGGTGGTGGTGATGATTTTGGTGGATTTAGTTT
TGGTAATATGGGAGGTATGGGCGGCATGGGTGGCATGGGTGGTGGNCACAAGANGAGANG
AANGGGTGANGATNTTGAACATGAANTGAA----------
Length of 5' end seq. 270
3' end seq. ID SFD617Z
3' end seq. 
>SFD617Z.Seq
----------GGTGATGTAATCATTACAATTCGTGAGAAACCAAATGTAAATTTCAANAN
AAATGGTGATAATTTAATNTACNCCNAACGTTTAAAATTNTTANACTCAATCGCTGGTAG
TCNATTCATTATAAACCCNTTGGATCAACGTAAACTTTGGGTCAATCATGANAAAGGTGA
TATAATTAAGCAAGGTGATATGCGTTACATANANAATGAAGGTATGCCAATTAAAGGNAC
CTCTANAAAAGGTAAATTAATCATTGCTTTTGATATTGAATATCCATCGAATNTTACAAA
TGATGATATTGAAAAACTCTNTAAAATCTTACCAAAAGCTGCCNCCCCTTNTGNTTCAAA
ATCTGATTGTAAANCGGTTGGTCTCTCAAAGGTAAACTTTAANACCAACGAACAAAGTTC
TCATGGTGGNGCNGGTGGTGCTTANCAACAACATGGTGGNGCTTATGGTCATCAAAAACA
ACNACAACAAGGTTTTAANCCTGCTGANTTTGGNGCNCNATTTGGTGGTGGAGGACCANA
ANAANATTTCCAGAGCTATNATNAAATAANTTTATATAATAATTT
Length of 3' end seq. 575
Connected seq. ID SFD617P
Connected seq. 
>SFD617P.Seq
TTTAAGTGATCCAGAGAAGAGAAAGATGTACGATAGTTATGGTTCTGAAGGTATGAAGGA
GAGTGGTTTCCATGCATCATCAGCTGAAGACCTCTTCTCACATTTCTTTGGTGCAGGAGG
TGGCGGTGGTGGATTTAGTTTCGGAGGTGGTGGTGGTGATGATTTTGGTGGATTTAGTTT
TGGTAATATGGGAGGTATGGGCGGCATGGGTGGCATGGGTGGTGGNCACAAGANGAGANG
AANGGGTGANGATNTTGAACATGAANTGAA----------GGTGATGTAATCATTACAAT
TCGTGAGAAACCAAATGTAAATTTCAANANAAATGGTGATAATTTAATNTACNCCNAACG
TTTAAAATTNTTANACTCAATCGCTGGTAGTCNATTCATTATAAACCCNTTGGATCAACG
TAAACTTTGGGTCAATCATGANAAAGGTGATATAATTAAGCAAGGTGATATGCGTTACAT
ANANAATGAAGGTATGCCAATTAAAGGNACCTCTANAAAAGGTAAATTAATCATTGCTTT
TGATATTGAATATCCATCGAATNTTACAAATGATGATATTGAAAAACTCTNTAAAATCTT
ACCAAAAGCTGCCNCCCCTTNTGNTTCAAAATCTGATTGTAAANCGGTTGGTCTCTCAAA
GGTAAACTTTAANACCAACGAACAAAGTTCTCATGGTGGNGCNGGTGGTGCTTANCAACA
ACATGGTGGNGCTTATGGTCATCAAAAACAACNACAACAAGGTTTTAANCCTGCTGANTT
TGGNGCNCNATTTGGTGGTGGAGGACCANAANAANATTTCCAGAGCTATNATNAAATAAN
TTTATATAATAATTT
Length of connected seq. 845
Full length Seq ID -
Full length Seq. -
Length of full length seq. -