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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD606
Library SF
(Link to library)
Clone ID SFD606
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID SFD606P
(Link to Original site)
Representative DNA sequence 
>SFD606 (SFD606Q) /CSM/SF/SFD6-A/SFD606Q.Seq.d/
CAACAATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAG
TTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTG
TTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATC
GTGAACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCG
AAGTTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTA
AGAGAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAGAAGGTTCATCCGATT
CTGAAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATA
TGGTCGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCA
TTCATACACAAAAACGTAATCCXXXXXXXXXXGCCGTAAANGGTGGTGTTAAAAACTNNC
AACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAA
ACTCNTTCGGTGGTCCAGANCCNCANCCAGAATTTGCTCAACATAAATTTGNCGTCTCTG
GTTTCGCTGCTCGTCAACCATTCAATCATCCAAATGACGACTTTGTTCAACCAGGTGATT
TATATAGACTCATGTCTGNAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACA
NGTCCGGTGTCNCCNNCAAANAAANTCNAGTTCGNGCCGTTTCNAACCTTTCCAAGGCTG
CCAAANANTTAGGNGCTCGTTNANGTAANGGTCNTGGTATTGATGTTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
tiyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDR
ERIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEEGSSDS
ERDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRN---

---AVXGGVKNXQRDGFMAVNGNGGKGPNYQPNSFGGPXPXPEFAQHKFXVSGFAARQPF
NHPNDDFVQPGDLYRLMSXDAKSRFVSNLVGHXSGVXXKXXXVRAVSNLSKAAKXLGARX
XXGXGIDV
Translated Amino Acid sequence (All Frames) 
Frame A:
qqyilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linllisi
vnvsqnvlymlkvlvpmvisklpqvmyqngvklns*iklvrehqsspvslllvvkkvhpi
lkeiqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvi---

---AVXGGVKNXQRDGFMAVNGNGGKGPNYQPNSFGGPXPXPEFAQHKFXVSGFAARQPF
NHPNDDFVQPGDLYRLMSXDAKSRFVSNLVGHXSGVXXKXXXVRAVSNLSKAAKXLGARX
XXGXGIDV

Frame B:
nnifylgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsfrs
*typrtcctc*rcwcpwlfrsylk*ctkmv*s*ilk*sw*entnlhpflycww*rrfirf
*krskrfrcqily*rr*l*ygr**yssflys*sikiprfhsytkt*s---

---p*xvvlktxnvmvswlsmvmvvkvqtinqtxsvvqxxxqnllninlxslvsllvnhs
iiqmttlfnqviyidsclxmpnlvssli*svtxpvspxxkxxfxpfxtfprlpxx*xlvx
vxvxvlml

Frame C:
tiyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDR
ERIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEEGSSDS
ERDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRN---

---rkxwc*klxt*wfhgcqw*ww*rsklstklxrwsrxxxricst*ixrlwfrcsstiq
ssk*rlcstr*fi*thvxrcqisfrl*fsrsxvrcxxqxxsssxrfxpfqgcqxxrxsxx
*xswy*c*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD606 (SFD606Q) /CSM/SF/SFD6-A/SFD606Q.Seq.d/                       1459   0.0
VSD165 (VSD165Q) /CSM/VS/VSD1-C/VSD165Q.Seq.d/                        892   0.0
VFN609 (VFN609Q) /CSM/VF/VFN6-A/VFN609Q.Seq.d/                        892   0.0
VFM644 (VFM644Q) /CSM/VF/VFM6-B/VFM644Q.Seq.d/                        892   0.0
VFF539 (VFF539Q) /CSM/VF/VFF5-B/VFF539Q.Seq.d/                        892   0.0
VFA796 (VFA796Q) /CSM/VF/VFA7-D/VFA796Q.Seq.d/                        892   0.0
VFA635 (VFA635Q) /CSM/VF/VFA6-B/VFA635Q.Seq.d/                        892   0.0
VFA593 (VFA593Q) /CSM/VF/VFA5-D/VFA593Q.Seq.d/                        892   0.0
SFK359 (SFK359Q) /CSM/SF/SFK3-C/SFK359Q.Seq.d/                        892   0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/                        892   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds.   892   0.0    2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   860   0.0    11
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds.   103   2e-37  4
AP004595|AP004595.1 Oceanobacillus iheyensis genomic DNA, section 3/13.    70   2e-19  6
AX536932|AX536932.1 Sequence 533 from Patent WO02064766.          101   2e-17  1
AB006327|AB006327.1 Candida albicans mRNA for catalase, complete cds.    94   4e-15  1
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing  said  catalase, and process for preparing catalase using the genetic engineering  technology.    68   5e-15  3
AE006036|AE006036.1 Pasteurella multocida PM70 section 3 of 204 of the complete genome.    86   1e-12  1
U40704|U40704.1 Candida albicans catalase (Cat) gene, complete cds.    86   1e-12  1
BH374641|BH374641.1 AG-ND-106I24.TR ND-TAM Anopheles gambiae genomic clone AG-ND-106I24 , DNA sequence.    66   1e-12  2
dna update 2003.12.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ...   314   3e-84
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c...   255   2e-66
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027...   237   4e-61
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ...   237   4e-61
(Q9XZD5) RecName: Full=Peroxisomal catalase;          EC=1.11.1....   236   1e-60
(O93662) RecName: Full=Catalase;          EC=1.11.1.6;  &AJ00593...   235   1e-60
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...   234   2e-60
(P26901) RecName: Full=Vegetative catalase;          EC=1.11.1.6...   234   4e-60
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili...   234   4e-60
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62...   228   3e-58
protein update 2009. 5.23
PSORT 

 psg: 0.89  gvh: 0.57  alm: 0.44  top: 0.40  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: extracellular, including cell wall
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SFD606 is cyt
5' end seq. ID SFD606F
5' end seq. 
>SFD606F.Seq
CAACAATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAG
TTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTG
TTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATC
GTGAACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCG
AAGTTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTA
AGAGAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAGAAGGTTCATCCGATT
CTGAAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATA
TGGTCGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCA
TTCATACACAAAAACGTAATCC----------
Length of 5' end seq. 502
3' end seq. ID SFD606Z
3' end seq. 
>SFD606Z.Seq
----------GCCGTAAANGGTGGTGTTAAAAACTNNCAACGTGATGGTTTCATGGCTGT
CAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCNTTCGGTGGTCCAGANCC
NCANCCAGAATTTGCTCAACATAAATTTGNCGTCTCTGGTTTCGCTGCTCGTCAACCATT
CAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGNAGA
TGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACANGTCCGGTGTCNCCNNCAAANA
AANTCNAGTTCGNGCCGTTTCNAACCTTTCCAAGGCTGCCAAANANTTAGGNGCTCGTTN
ANGTAANGGTCNTGGTATTGATGTTAA
Length of 3' end seq. 377
Connected seq. ID SFD606P
Connected seq. 
>SFD606P.Seq
CAACAATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAG
TTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTG
TTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATC
GTGAACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCG
AAGTTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTA
AGAGAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAGAAGGTTCATCCGATT
CTGAAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATA
TGGTCGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCA
TTCATACACAAAAACGTAATCC----------GCCGTAAANGGTGGTGTTAAAAACTNNC
AACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAA
ACTCNTTCGGTGGTCCAGANCCNCANCCAGAATTTGCTCAACATAAATTTGNCGTCTCTG
GTTTCGCTGCTCGTCAACCATTCAATCATCCAAATGACGACTTTGTTCAACCAGGTGATT
TATATAGACTCATGTCTGNAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACA
NGTCCGGTGTCNCCNNCAAANAAANTCNAGTTCGNGCCGTTTCNAACCTTTCCAAGGCTG
CCAAANANTTAGGNGCTCGTTNANGTAANGGTCNTGGTATTGATGTTAA
Length of connected seq. 879
Full length Seq ID -
Full length Seq. -
Length of full length seq. -