>SFD596 (SFD596Q) /CSM/SF/SFD5-D/SFD596Q.Seq.d/
AATAACGCCCTTACTTTTAATTATCTCTTTTATTCATGTCATCAACTACTACTCATTCAA
AGAAAGCCATCCGTAAAGCCAAAGTGTCTTCCACCGCCAAACGTGCCGCTGAAGTGACAA
CTGCCTCCGATGATGCTATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCACTG
AAGTTGATGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCAGAG
AGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACCATTGACGCTTTAA
AAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTTTACCATCCACTGCTCCCAGAATG
GTGTTGAACCAACCTTGAAGACCATTATGGACAATGGTGCTGCATCAAATGAATTATTTC
AATTGCTTCAACCTACCCACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGAAA
CATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAACTG
ACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTCAG
CCCXXXXXXXXXX

*rpyf*LSLLFMSSTTTHSKKAIRKAKVSSTAKRAAEVTTASDDAITVQVKSKKTLRPTE
VDDEIYSTESTDVSDVEVREKVPKKSKTNSIEAKTIDALKNAATAVIFMNLFTIHCSQNG
VEPTLKTIMDNGAASNELFQLLQPTHNESVKNNDKIEGETLKKLIHRNFRSKTLVPFKTD
YEAANTKVVEAINHRNCYSA---

Frame A:
nnaltfnylfyschqllliqrkpsvkpkclpppnvplk*qlppmmlllfk*nqkrlfvpl
klmmkfiqlkalmyptskserkcqrnqrpirlklkpltl*kmlpllsss*islpstaprm
vlnqp*rplwtmvlhqmnyfncfnlptmnqlrttiklkvkh*rs*stvtldprlwfhskl
ttklptlk*sklltivtatq---


Frame B:
itpllliisfihvinyysfkeshp*sqsvfhrqtcr*sdnclr*cyycsskikkdsssh*
s***nlfn*kh*cirrrsqresakeikdqfd*s*nh*rfkkcchcchlheslyhpllpew
c*tnledhygqwccik*iisiastypq*is*eqr*n*r*nikeanpp*l*iqdfgsiqn*
lrscqh*ssrsy*ps*llls---


Frame C:
*rpyf*LSLLFMSSTTTHSKKAIRKAKVSSTAKRAAEVTTASDDAITVQVKSKKTLRPTE
VDDEIYSTESTDVSDVEVREKVPKKSKTNSIEAKTIDALKNAATAVIFMNLFTIHCSQNG
VEPTLKTIMDNGAASNELFQLLQPTHNESVKNNDKIEGETLKKLIHRNFRSKTLVPFKTD
YEAANTKVVEAINHRNCYSA---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD596 (SFD596Q) /CSM/SF/SFD5-D/SFD596Q.Seq.d/                       1195   0.0
CFK389 (CFK389Q) /CSM/CF/CFK3-D/CFK389Q.Seq.d/                       1132   0.0
CFC606 (CFC606Q) /CSM/CF/CFC6-A/CFC606Q.Seq.d/                       1130   0.0
SFG296 (SFG296Q) /CSM/SF/SFG2-D/SFG296Q.Seq.d/                       1116   0.0
VFA456 (VFA456Q) /CSM/VF/VFA4-C/VFA456Q.Seq.d/                       1072   0.0
VHP227 (VHP227Q) /CSM/VH/VHP2-B/VHP227Q.Seq.d/                       1061   0.0
AHI310 (AHI310Q) /CSM/AH/AHI3-A/AHI310Q.Seq.d/                       1021   0.0
AHH192 (AHH192Q) /CSM/AH/AHH1-D/AHH192Q.Seq.d/                       1013   0.0
CHO119 (CHO119Q) /CSM/CH/CHO1-A/CHO119Q.Seq.d/                        948   0.0
VHG643 (VHG643Q) /CSM/VH/VHG6-B/VHG643Q.Seq.d/                        908   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF049230|AF049230.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) gene, complete cds; and Pro (pro) and Pol (pol) genes, partial cds.  1074   0.0    1
AF017040|AF017040.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) mRNA, complete cds; and Pro (pro) and Pol (pol) mRNA, partial cds.  1074   0.0    1
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   813   0.0    10
AF017044|AF017044.1 Dictyostelium discoideum LTR-retrotransposon Skipper, partial genomic sequence, 3' end.    64   2e-06  1
AF017046|AF017046.1 Dictyostelium discoideum LTR-retrotransposon Skipper, partial genomic sequence, 3' end.    64   2e-06  1
AF017043|AF017043.1 Dictyostelium discoideum LTR-retrotransposon Skipper, partial genomic sequence, 5' end.    64   2e-06  1
AF017042|AF017042.1 Dictyostelium discoideum LTR-retrotransposon Skipper, partial genomic sequence, 5' end.    64   2e-06  1
AF017047|AF017047.1 Dictyostelium discoideum LTR-retrotransposon Skipper, partial genomic sequence, 3' end.    64   2e-06  1
AF017045|AF017045.1 Dictyostelium discoideum LTR-retrotransposon Skipper, partial genomic sequence, 3' end.    64   2e-06  1
AF049229|AF049229.1 Dictyostelium discoideum LTR-retrotransposon Skipper, 3' LTR sequence.    52   0.009  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017040_1(AF017040|pid:none) Dictyostelium discoideum LTR-retro...   352   3e-96
AY523538_1(AY523538|pid:none) Sweet potato feathery mottle virus...    39   0.11
CP000922_2603(CP000922|pid:none) Anoxybacillus flavithermus WK1,...    39   0.11
CP001047_351(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    39   0.11
AY523552_1(AY523552|pid:none) Sweet potato feathery mottle virus...    36   0.72
(Q10267) RecName: Full=Uncharacterized protein C13G7.03;  &CU329...    35   1.2
(Q80W71) RecName: Full=Pleckstrin homology domain-containing fam...    35   1.2
T19431(T19431) hypothetical protein C25A1.10 - Caenorhabditis el...    35   1.2
AE014188_199(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.2
FM992688_244(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   1.2

 psg: 0.93  gvh: 0.69  alm: 0.39  top: 0.83  tms: 0.00  mit: 0.44  mip: 0.06
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	  8.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: vacuolar

>> prediction for SFD596 is mit

>SFD596F.Seq
AATAACGCCCTTACTTTTAATTATCTCTTTTATTCATGTCATCAACTACTACTCATTCAA
AGAAAGCCATCCGTAAAGCCAAAGTGTCTTCCACCGCCAAACGTGCCGCTGAAGTGACAA
CTGCCTCCGATGATGCTATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCACTG
AAGTTGATGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCAGAG
AGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACCATTGACGCTTTAA
AAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTTTACCATCCACTGCTCCCAGAATG
GTGTTGAACCAACCTTGAAGACCATTATGGACAATGGTGCTGCATCAAATGAATTATTTC
AATTGCTTCAACCTACCCACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGAAA
CATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAACTG
ACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTCAG
CCC----------