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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD466
Library SF
(Link to library)
Clone ID SFD466
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03475-1
Original site URL
Representative seq. ID SFD466Z
(Link to Original site)
Representative DNA sequence 
>SFD466 (SFD466Q) /CSM/SF/SFD4-C/SFD466Q.Seq.d/
XXXXXXXXXXTATTTTNNAGNTAGNAAANANNCNACATGNTTAGGANGGNCNATTAGNTC
CNNTGGATCTTTNAANGNNAATNTAGGNTTAAAAAANNCNAGNCNAACTGAAANTGNTAT
TNAATTTNAAACTAGNNCNCCNAAANCAACANANCCCCCCCAAAAAAANTGGAATTGGNT
TTGGGNTTATTAATTATTNAGNNAAAATAATAANCAACAACAACNACNACNACNACNACN
ACNACNACNACAANAANAANAATTTCNACNANATGAANAATTTTNCNGNTCNACCCCAAA
ATTAANTGNNAANTCCCCNGNTANTTTAANTG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---ixxxxxxxhx*xgxlxpxdlxxxx*x*KXXXXLKXXXNXKLXXXXQXXPPKKXGIGF
GXINYXXKIIXNNNXXXXXXXXXXXXNFXXMXNFXXXPQN*xxxpxxx*x
Translated Amino Acid sequence (All Frames) 
Frame A:
---ixxxxxxxhx*xgxlxpxdlxxxx*x*KXXXXLKXXXNXKLXXXXQXXPPKKXGIGF
GXINYXXKIIXNNNXXXXXXXXXXXXNFXXMXNFXXXPQN*xxxpxxx*x


Frame B:
---fxx*xxxxmxrxxx*xxwifxxxxrxkkxxxn*xxyxixn*xxxxnxxppkkxelxl
glliixxk**xttttttttttttxxxistx*xixxxxpkixxxxpxxfx


Frame C:
---fxxxkxxtxlgxxixsxgsxxxnxglkxxxxtexxixfxtxxpkxtxppqkxwnwxw
xy*lxxxnnxqqqxxxxxxxxxqxxxfxxxexfxxstpklxxxspxxlx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD466 (SFD466Q) /CSM/SF/SFD4-C/SFD466Q.Seq.d/                        121   7e-27
SFJ660 (SFJ660Q) /CSM/SF/SFJ6-C/SFJ660Q.Seq.d/                        109   3e-23
SFL196 (SFL196Q) /CSM/SF/SFL1-D/SFL196Q.Seq.d/                        107   1e-22
own update 2001. 6.14
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 321,943
Number of Sequences: 30679270
Number of extensions: 321943
Number of successful extensions: 3852
Number of sequences better than 10.0: 0
length of query: 332
length of database: T,251,742,201
effective HSP length: 22
effective length of query: 310
effective length of database: S,576,798,261
effective search space: 11028807460910
effective search space used: 11028807460910
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.







Dictyostelium discoideum cDNA Project Home
dna update 2003.12.22
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 156,743,838
protein update 2009. 5.23
PSORT 

 psg: 0.64  gvh: 0.43  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SFD466 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFD466Z
3' end seq. 
>SFD466Z.Seq
----------TATTTTNNAGNTAGNAAANANNCNACATGNTTAGGANGGNCNATTAGNTC
CNNTGGATCTTTNAANGNNAATNTAGGNTTAAAAAANNCNAGNCNAACTGAAANTGNTAT
TNAATTTNAAACTAGNNCNCCNAAANCAACANANCCCCCCCAAAAAAANTGGAATTGGNT
TTGGGNTTATTAATTATTNAGNNAAAATAATAANCAACAACAACNACNACNACNACNACN
ACNACNACNACAANAANAANAATTTCNACNANATGAANAATTTTNCNGNTCNACCCCAAA
ATTAANTGNNAANTCCCCNGNTANTTTAANTG
Length of 3' end seq. 322
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -