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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD419
Library SF
(Link to library)
Clone ID SFD419
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16300-1
Original site URL
Representative seq. ID SFD419P
(Link to Original site)
Representative DNA sequence 
>SFD419 (SFD419Q) /CSM/SF/SFD4-A/SFD419Q.Seq.d/
ATTTTTTATTTATTATTTATTTGTTGTGCTAGTATTATTTTTATTATAGATAATAGAATA
CAGCCTTCATATATTATAATATAGCGAAAAAATGAATCATTCAAGTAAAAAAAATAAAAA
TCGTATTCTTAGAAATAAAGCTAGAATATATTGTGATGTAAATCTTCACAAACCAAAGGA
ATATTGGAACTATGAAGCTTTAAATGTTAAATGGGAAACTCAAGATGATTATGAAATTAT
TAGAAAAATAGGTAGAGGTAAATATTCAGAAGTATTTGAAGGTGCCAACATTAAAAACAA
TGAAAAATGCGTAATTAAAGTATTGAAACCAGTTAAAAAGAAGAAGATTAAGAGAGAGAT
TAAGATTCTTCAAAATCTTTGTGGTGGACCAAATATCATTACATTATATGATGTCGTTAG
AGATCCACAATCAAAGACACCAAGCTTAATTTTTGAGTATATCAACAATACCGATTTCAA
ACATCTCTCACCAACACTCACCGATTTCGATGTAAGATATTACATTAGAGAATTATTACA
CGCATTGGATTTTTGTCATTCAAACGGTATCATGCATAGAGATGTTAAACCATCAAACGT
TATGATTGATCATAAAAAAAAGAAAATTGTATCTCATCGATTGGXXXXXXXXXXTTCCAT
GGTCNTGNTAATATTGATCAAGTTAGTAAAGATTGTAAAGATTTTAGGTACAGAAGNATT
TTATGCCTATTTAGATAAATATGGTATCGNTGTTGATCANNCTATCCTTAGTATCANTGG
AGGAACATCCANAGNGACCATGGTCAAGNTTTATTACCAAAGAAAACCAACATCTTGCAG
TACCAGAGGCCATTGACTTTTTGGAAAAATTATTACGTTATGACCCAGCCGAAAGATTAA
CTACAAGAGAAGCTATGGAACACCCATACTTTAAACCATTATCTCATTAAATAATTATAT
AATCATAATTAAAATAATAACAACTGATATTAATTTCCCAACAAGAAATTAAAATCAAAA
ATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAATCAAAATCAAA
ATCAAAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAACAAAAACAAAAACAAAA
ACNAAAACAAAACCAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ffiyylfvvlvlfll*iieyslhil*YSEKMNHSSKKNKNRILRNKARIYCDVNLHKPKE
YWNYEALNVKWETQDDYEIIRKIGRGKYSEVFEGANIKNNEKCVIKVLKPVKKKKIKREI
KILQNLCGGPNIITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLH
ALDFCHSNGIMHRDVKPSNVMIDHKKKKIVSHRL---

---SMVXXILIKLVKIVKILGTEXFYAYLDKYGIXVDXXILSIXGGTSXXTMVKXYYQRK
PTSCSTRGH*lfgkiitl*psrkinykrsygtpil*tiislnnyiiiikiittdinfptr
n*nqksksksipipipksksksksksksksklklkqkqkqkqkqkxkqnq
Translated Amino Acid sequence (All Frames) 
Frame A:
ifyllficcasiifiidnriqpsyiii*rknesfk*kk*ksys*k*s*nil*ckssqtkg
ilel*sfkc*mgnsr*l*ny*knr*r*ifrsi*rcqh*kq*kmrn*siets*keed*erd
*dsskslwwtkyhyii*cr*rstikdtklnf*vyqqyrfqtsltnthrfrckilh*riit
rigflsfkryha*rc*tikryd*s*kkencissi---

---fhgxxnidqvskdckdfryrxilclfr*iwyrc*sxyp*yxwrnixxdhgqxllpkk
tnilqyqrpltfwknyyvmtqpkd*lqeklwnthtlnhylik*lynhn*nnnn*y*fpnk
klkskikikintntntkikikikikikikiktktktktktktktktktkpk

Frame B:
ffiyylfvvlvlfll*iieyslhil*YSEKMNHSSKKNKNRILRNKARIYCDVNLHKPKE
YWNYEALNVKWETQDDYEIIRKIGRGKYSEVFEGANIKNNEKCVIKVLKPVKKKKIKREI
KILQNLCGGPNIITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLH
ALDFCHSNGIMHRDVKPSNVMIDHKKKKIVSHRL---

---SMVXXILIKLVKIVKILGTEXFYAYLDKYGIXVDXXILSIXGGTSXXTMVKXYYQRK
PTSCSTRGH*lfgkiitl*psrkinykrsygtpil*tiislnnyiiiikiittdinfptr
n*nqksksksipipipksksksksksksksklklkqkqkqkqkqkxkqnq

Frame C:
flfiiyllc*yyfyyr**ntafiyyniakk*iiqvkkikivfleikleyivm*iftnqrn
igtmkl*mlngklkmimkllek*vevniqkylkvptlktmkna*lky*nqlkrrrlrerl
rffkifvvdqislhymmsleihnqrhqa*flsistipisnishqhspism*ditlenyyt
hwifviqtvsciemlnhqtl*liikkrklylidw---

---pwsx*y*ss**rl*rf*vqkxfmpi*inmvsxlixlslvsxeehpxxpwsxfitken
qhlavpeaidflekllrydpaerlttreamehpyfkplsh*iii*s*lk**qlilisqqe
ikiknqnqnqyqyqyqnqnqnqnqnqnqnqn*n*nknknknknknxnktk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD419 (SFD419Q) /CSM/SF/SFD4-A/SFD419Q.Seq.d/                       1588   0.0
AFD789 (AFD789Q) /CSM/AF/AFD7-D/AFD789Q.Seq.d/                        983   0.0
SFF312 (SFF312Q) /CSM/SF/SFF3-A/SFF312Q.Seq.d/                        973   0.0
SFF289 (SFF289Q) /CSM/SF/SFF2-D/SFF289Q.Seq.d/                        973   0.0
SFB548 (SFB548Q) /CSM/SF/SFB5-B/SFB548Q.Seq.d/                        973   0.0
CFF548 (CFF548Q) /CSM/CF/CFF5-B/CFF548Q.Seq.d/                        973   0.0
VFA127 (VFA127Q) /CSM/VF/VFA1-B/VFA127Q.Seq.d/                        969   0.0
SHL221 (SHL221Q) /CSM/SH/SHL2-A/SHL221Q.Seq.d/                        969   0.0
SHI863 (SHI863Q) /CSM/SH/SHI8-C/SHI863Q.Seq.d/                        969   0.0
SHC634 (SHC634Q) /CSM/SH/SHC6-B/SHC634Q.Seq.d/                        969   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L05535|L05535.1 Dictyostelium discoideum casein kinase II alpha subunit mRNA, complete cds.   969   0.0    3
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   779   0.0    13
AI730966|0    56   2e-17  4
AK070271|AK070271.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023047E06, full insert sequence.    52   6e-17  4
CB657452|CB657452.1 OSJNEc12M14.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc12M14 5', mRNA sequence.    52   1e-15  3
CB659621|CB659621.1 OSJNEc16M04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc16M04 5', mRNA sequence.    52   1e-15  3
CB658505|CB658505.1 OSJNEc14J08.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc14J08 5', mRNA sequence.    52   1e-15  3
CA486859|CA486859.1 WHE4336_G09_N18ZS Wheat meiotic anther cDNA library Triticum aestivum cDNA clone WHE4336_G09_N18, mRNA sequence.    52   1e-15  3
BF430681|BF430681.1 OG03E04T3 OG Oryza sativa cDNA clone OG03E04 5' similar to protein kinase CK2, alpha subunit, mRNA sequence.    52   1e-15  3
CA486564|CA486564.1 WHE4333_C01_E01ZS Wheat meiotic anther cDNA library Triticum aestivum cDNA clone WHE4333_C01_E01, mRNA sequence.    52   1e-15  3
dna update 2003.12.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q02720) RecName: Full=Casein kinase II subunit alpha;          ...   323   9e-87
AC117076_51(AC117076|pid:none) Dictyostelium discoideum chromoso...   318   3e-85
(P28523) RecName: Full=Casein kinase II subunit alpha;          ...   233   1e-59
AB036786_1(AB036786|pid:none) Oryza sativa Indica Group Kasalath...   233   1e-59
AP005244_27(AP005244|pid:none) Oryza sativa Japonica Group genom...   232   2e-59
BT035859_1(BT035859|pid:none) Zea mays full-length cDNA clone ZM...   231   3e-59
AF370308_1(AF370308|pid:none) Arabidopsis thaliana putative case...   231   4e-59
EU284834_1(EU284834|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   230   6e-59
D10247_1(D10247|pid:none) Arabidopsis thaliana ATPK15D mRNA for ...   230   8e-59
EU966838_1(EU966838|pid:none) Zea mays clone 297679 unknown mRNA.     229   1e-58
protein update 2009. 5.23
PSORT 

 psg: 0.32  gvh: 0.09  alm: 0.32  top: 0.43  tms: 0.07  mit: 0.35  mip: 0.05
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SFD419 is nuc
5' end seq. ID SFD419F
5' end seq. 
>SFD419F.Seq
ATTTTTTATTTATTATTTATTTGTTGTGCTAGTATTATTTTTATTATAGATAATAGAATA
CAGCCTTCATATATTATAATATAGCGAAAAAATGAATCATTCAAGTAAAAAAAATAAAAA
TCGTATTCTTAGAAATAAAGCTAGAATATATTGTGATGTAAATCTTCACAAACCAAAGGA
ATATTGGAACTATGAAGCTTTAAATGTTAAATGGGAAACTCAAGATGATTATGAAATTAT
TAGAAAAATAGGTAGAGGTAAATATTCAGAAGTATTTGAAGGTGCCAACATTAAAAACAA
TGAAAAATGCGTAATTAAAGTATTGAAACCAGTTAAAAAGAAGAAGATTAAGAGAGAGAT
TAAGATTCTTCAAAATCTTTGTGGTGGACCAAATATCATTACATTATATGATGTCGTTAG
AGATCCACAATCAAAGACACCAAGCTTAATTTTTGAGTATATCAACAATACCGATTTCAA
ACATCTCTCACCAACACTCACCGATTTCGATGTAAGATATTACATTAGAGAATTATTACA
CGCATTGGATTTTTGTCATTCAAACGGTATCATGCATAGAGATGTTAAACCATCAAACGT
TATGATTGATCATAAAAAAAAGAAAATTGTATCTCATCGATTGG----------
Length of 5' end seq. 644
3' end seq. ID SFD419Z
3' end seq. 
>SFD419Z.Seq
----------TTCCATGGTCNTGNTAATATTGATCAAGTTAGTAAAGATTGTAAAGATTT
TAGGTACAGAAGNATTTTATGCCTATTTAGATAAATATGGTATCGNTGTTGATCANNCTA
TCCTTAGTATCANTGGAGGAACATCCANAGNGACCATGGTCAAGNTTTATTACCAAAGAA
AACCAACATCTTGCAGTACCAGAGGCCATTGACTTTTTGGAAAAATTATTACGTTATGAC
CCAGCCGAAAGATTAACTACAAGAGAAGCTATGGAACACCCATACTTTAAACCATTATCT
CATTAAATAATTATATAATCATAATTAAAATAATAACAACTGATATTAATTTCCCAACAA
GAAATTAAAATCAAAAATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAAT
CAAAATCAAAATCAAAATCAAAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAAC
AAAAACAAAAACAAAAACNAAAACAAAACCAAAA
Length of 3' end seq. 504
Connected seq. ID SFD419P
Connected seq. 
>SFD419P.Seq
ATTTTTTATTTATTATTTATTTGTTGTGCTAGTATTATTTTTATTATAGATAATAGAATA
CAGCCTTCATATATTATAATATAGCGAAAAAATGAATCATTCAAGTAAAAAAAATAAAAA
TCGTATTCTTAGAAATAAAGCTAGAATATATTGTGATGTAAATCTTCACAAACCAAAGGA
ATATTGGAACTATGAAGCTTTAAATGTTAAATGGGAAACTCAAGATGATTATGAAATTAT
TAGAAAAATAGGTAGAGGTAAATATTCAGAAGTATTTGAAGGTGCCAACATTAAAAACAA
TGAAAAATGCGTAATTAAAGTATTGAAACCAGTTAAAAAGAAGAAGATTAAGAGAGAGAT
TAAGATTCTTCAAAATCTTTGTGGTGGACCAAATATCATTACATTATATGATGTCGTTAG
AGATCCACAATCAAAGACACCAAGCTTAATTTTTGAGTATATCAACAATACCGATTTCAA
ACATCTCTCACCAACACTCACCGATTTCGATGTAAGATATTACATTAGAGAATTATTACA
CGCATTGGATTTTTGTCATTCAAACGGTATCATGCATAGAGATGTTAAACCATCAAACGT
TATGATTGATCATAAAAAAAAGAAAATTGTATCTCATCGATTGG----------TTCCAT
GGTCNTGNTAATATTGATCAAGTTAGTAAAGATTGTAAAGATTTTAGGTACAGAAGNATT
TTATGCCTATTTAGATAAATATGGTATCGNTGTTGATCANNCTATCCTTAGTATCANTGG
AGGAACATCCANAGNGACCATGGTCAAGNTTTATTACCAAAGAAAACCAACATCTTGCAG
TACCAGAGGCCATTGACTTTTTGGAAAAATTATTACGTTATGACCCAGCCGAAAGATTAA
CTACAAGAGAAGCTATGGAACACCCATACTTTAAACCATTATCTCATTAAATAATTATAT
AATCATAATTAAAATAATAACAACTGATATTAATTTCCCAACAAGAAATTAAAATCAAAA
ATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAATCAAAATCAAA
ATCAAAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAACAAAAACAAAAACAAAA
ACNAAAACAAAACCAAAA
Length of connected seq. 1148
Full length Seq ID -
Full length Seq. -
Length of full length seq. -