SFD294 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFD294
Library	SF (Link to library)
Clone ID	SFD294 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13863-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFD2-D/SFD294Q.Seq.d/
Representative seq. ID	SFD294E (Link to Original site)
Representative DNA sequence	>SFD294 (SFD294Q) /CSM/SF/SFD2-D/SFD294Q.Seq.d/ ATTAATAGTAATTATTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAAACAT ATACAATGATTGATTCAGATATAGAATTAAATAAAATAATAGTAGTACCATTAATATCAA AAGATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAATC AACCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTCTTTAATTAATCAAACTT CTGGTAATAATGATGAAGAAAGATTAGTTTTATTATTAAAACAACAACAACAAGAGGTAG AAAAAGATAAAACATTTGATACAAATAAATATTTTAACGAATTATCAACAATTTTATTTG GAAAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATATAATGTTAAAATATT TAACATATACTCGTCAAGGATTAGTAATGATTGCAGACCAACAAACCAAAGGTAGAGGAC GTGGTGTAAATAAATTCTTGTCTCCATTGGGATGTTTGTTAATGTCATTCAAATGTAAAC AAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAAG CAATTCACTCTTTCCCAAGTGCATCTGATTTAAATCTTCGTTTGAAGTGGCCAAACGATA TCTATAGTAATGAACCAGGTATGAAAGTTGGTGGTGTCCTCTGTGAATCAAATTATCTTA ACAATGAATTTGATGTTGTCATTGGTGTTGGTGTTAATCTTTCAAATTCAAATAATCCAT CAACAACTATAAATCAATTAATTCAAAAGAAAAAATATGGATTTTCATCATCATCATTGG CAACAAGTACTGATATTCCAATTTATATTAGTAGAGAAGAATTGGTTTCAAAATTCTTTA ACAAATTCGAACCAATGTTTATGGAATTTACAAGAGATGGCTTTAATGCAGATCTTGAAA ATAGATACACTGACTTATGGATGCATACAAATCAAATTGTAAAATTTAAAGAAAGAGATA ACCATCATGTTAAAATCATTGGTATTTCTGATAGTGGTTTCCTTAAAGCTATTGAATGTG ATGCTGATGGTAATACATCTTCTGACTCTGAAACCGTTGAGCTTCACCCAGATGGTACTT CATTNATATTCAAAACTTAATTTTAAGCAAAAATCACAAC
sequence update	2001. 6. 9
Translated Amino Acid sequence	**lffflpslfflnnkTYTMIDSDIELNKIIVVPLISKDSLDINDAKNYYGTELYPNQ PIPTIVSAQSEVDSLINQTSGNNDEERLVLLLKQQQQEVEKDKTFDTNKYFNELSTILFG KNLIHSEVISSTQDIMLKYLTYTRQGLVMIADQQTKGRGRGVNKFLSPLGCLLMSFKCKQ TDGNKLPFLQYLAGMAMVEAIHSFPSASDLNLRLKWPNDIYSNEPGMKVGGVLCESNYLN NEFDVVIGVGVNLSNSNNPSTTINQLIQKKKYGFSSSSLATSTDIPIYISREELVSKFFN KFEPMFMEFTRDGFNADLENRYTDLWMHTNQIVKFKERDNHHVKIIGISDSGFLKAIECD ADGNTSSDSETVELHPDGTSXIFKTfakit
Translated Amino Acid sequence (All Frames)	Frame A: insnyffsfphyffiinkhiqliqinik**yhyqkihilmmqkitmepsytqi nqfqpfqlnlkillikllvimmkkdfyynnnnkrkkikhliqiniltnyqqfyl erifilklvqhkicnihilvkd**lqtnkpkvedvvinsclhwdvcchsnvn klmvinyhsfniwlvwqwskqftlsqvhliifvsgqtisivmnqvklvvssvnqiil tmnlmlslvlvlifqiqiihqqlinfkrknmdfhhhhwqqvlifqfilveknwfqnsl tnsnqclwnlqemalmqilkidtltygciqiklnlkkeitimlkslvflivvslkllnv mlmvihlltlkplsftqmvlhxysklnfkqksq Frame B: liviiffpsliiffkiniyndfryriknnsstinikrfiryckkllwnrvipks tnsnhsfssisrffnsnfw**rkisfiikttttrgrkrniykifriinnfiw kefnsfsnfntrynvkifniyssrisndcrptnqrrtwckilvsigmfvnviqmt nwitipsifgwygngrsnslfpkcifkssfevakryl**tryeswwcplikls* qicchwcwcsfkfksinnyksinskekiwifiiiignkyysnlyrrigfkil qirtnvygiykrwlcrskihlmdayksnckirkrpscnhwyfwfpsym cwyiflnrasprwyfixiqnlilsknhn Frame C: *lffflpslfflnnkTYTMIDSDIELNKIIVVPLISKDSLDINDAKNYYGTELYPNQ PIPTIVSAQSEVDSLINQTSGNNDEERLVLLLKQQQQEVEKDKTFDTNKYFNELSTILFG KNLIHSEVISSTQDIMLKYLTYTRQGLVMIADQQTKGRGRGVNKFLSPLGCLLMSFKCKQ TDGNKLPFLQYLAGMAMVEAIHSFPSASDLNLRLKWPNDIYSNEPGMKVGGVLCESNYLN NEFDVVIGVGVNLSNSNNPSTTINQLIQKKKYGFSSSSLATSTDIPIYISREELVSKFFN KFEPMFMEFTRDGFNADLENRYTDLWMHTNQIVKFKERDNHHVKIIGISDSGFLKAIECD ADGNTSSDSETVELHPDGTSXIFKTfakit
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFD294 (SFD294Q) /CSM/SF/SFD2-D/SFD294Q.Seq.d/ 2133 0.0 SFJ133 (SFJ133Q) /CSM/SF/SFJ1-B/SFJ133Q.Seq.d/ 1338 0.0 SLA592 (SLA592Q) /CSM/SL/SLA5-D/SLA592Q.Seq.d/ 1320 0.0 SFF405 (SFF405Q) /CSM/SF/SFF4-A/SFF405Q.Seq.d/ 1316 0.0 AFC713 (AFC713Q) /CSM/AF/AFC7-A/AFC713Q.Seq.d/ 1287 0.0 CHB590 (CHB590Q) /CSM/CH/CHB5-D/CHB590Q.Seq.d/ 1281 0.0 SFE209 (SFE209Q) /CSM/SF/SFE2-A/SFE209Q.Seq.d/ 1104 0.0 SFJ562 (SFJ562Q) /CSM/SF/SFJ5-C/SFJ562Q.Seq.d/ 1055 0.0 AFI685 (AFI685Q) /CSM/AF/AFI6-D/AFI685Q.Seq.d/ 1053 0.0 AFL119 (AFL119Q) /CSM/AF/AFL1-A/AFL119Q.Seq.d/ 993 0.0
own update	2002.10. 8
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 46 1e-10 15 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 7e-10 14 AC116920\|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 42 1e-09 14 AC117070\|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 7e-08 14 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 9e-08 16 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 42 5e-07 17 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 38 9e-07 22 AL844505\|AL844505.1 Plasmodium falciparum chromosome 6. 34 1e-06 28 AE014822\|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence. 34 1e-06 20 AC117072\|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 36 2e-06 15
dna update	2004. 1.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AP008208_425(AP008208\|pid:none) Oryza sativa (japonica cultivar-... 172 2e-41 AC006053_17(AC006053\|pid:none) Arabidopsis thaliana chromosome 2... 169 2e-40 CP000582_324(CP000582\|pid:none) Ostreococcus lucimarinus CCE9901... 167 9e-40 G84651(G84651)biotin holocarboxylase synthetase [imported] - Ara... 166 1e-39 (P50747) RecName: Full=Biotin--protein ligase; EC=6.3.4... 159 2e-37 AP005804_18(AP005804\|pid:none) Oryza sativa Japonica Group genom... 157 5e-37 AK168925_1(AK168925\|pid:none) Mus musculus 16 days embryo kidney... 155 3e-36 (Q920N2) RecName: Full=Biotin--protein ligase; EC=6.3.4... 155 3e-36 AC007505_1(AC007505\|pid:none) Arabidopsis thaliana chromosome I ... 155 3e-36 AF414940_1(AF414940\|pid:none) Arabidopsis thaliana holocarboxyla... 153 1e-35
protein update	2009. 7. 3
PSORT	psg: 0.75 gvh: 0.35 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: cytoplasmic 36.0 %: nuclear 24.0 %: cytoskeletal 4.0 %: mitochondrial >> prediction for SFD294 is cyt
5' end seq. ID	SFD294F
5' end seq.	>SFD294F.Seq ATTAATAGTAATTATTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAAACAT ATACAATGATTGATTCAGATATAGAATTAAATAAAATAATAGTAGTACCATTAATATCAA AAGATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAATC AACCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTCTTTAATTAATCAAACTT CTGGTAATAATGATGAAGAAAGATTAGTTTTATTATTAAAACAACAACAACAAGAGGTAG AAAAAGATAAAACATTTGATACAAATAAATATTTTAACGAATTATCAACAATTTTATTTG GAAAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATATAATGTTAAAATATT TAACATATACTCGTCAAGGATTAGTAATGATTGCAGACCAACAAACCAAAGGTAGAGGAC GTGGTGTAAATAAATTCTTGTCTCCATTGGGATGTTTGTTAATGTCATTCAAATGTAAAC AAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAAG CAATTCACTCTTTCCCAAGTGCATCTGATTTAA----------
Length of 5' end seq.	633
3' end seq. ID	SFD294Z
3' end seq.	>SFD294Z.Seq ----------AGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATATAATGTTA AAATATTTAACATATACTCGTCAAGGATTAGTAATGATTGCAGACCAACAAACCAAAGGT AGAGGACGTGGTGTAAATAAATTCTTGTCTCCATTGGGATGTTTGTTAATGTCATTCAAA TGTAAACAAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATG GTCGAAGCAATTCACTCTTTCCCAAGTGCATCTGATTTAAATCTTCGTTTGAAGTGGCCA AACGATATCTATAGTAATGAACCAGGTATGAAAGTTGGTGGTGTCCTCTGTGAATCAAAT TATCTTAACAATGAATTTGATGTTGTCATTGGTGTTGGTGTTAATCTTTCAAATTCAAAT AATCCATCAACAACTATAAATCAATTAATTCAAAAGAAAAAATATGGATTTTCATCATCA TCATTGGCAACAAGTACTGATATTCCAATTTATATTAGTAGAGAAGAATTGGTTTCAAAA TTCTTTAACAAATTCGAACCAATGTTTATGGAATTTACAAGAGATGGCTTTAATGCAGAT CTTGAAAATAGATACACTGACTTATGGATGCATACAAATCAAATTGTAAAATTTAAAGAA AGAGATAACCATCATGTTAAAATCATTGGTATTTCTGATAGTGGTTTCCTTAAAGCTATT GAATGTGATGCTGATGGTAATACATCTTCTGACTCTGAAACCGTTGAGCTTCACCCAGAT GGTACTTCATTNATATTCAAAACTTAATTTTAAGCAAAAATCACAAC
Length of 3' end seq.	817
Connected seq. ID	SFD294P
Connected seq.	>SFD294P.Seq ATTAATAGTAATTATTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAAACAT ATACAATGATTGATTCAGATATAGAATTAAATAAAATAATAGTAGTACCATTAATATCAA AAGATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAATC AACCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTCTTTAATTAATCAAACTT CTGGTAATAATGATGAAGAAAGATTAGTTTTATTATTAAAACAACAACAACAAGAGGTAG AAAAAGATAAAACATTTGATACAAATAAATATTTTAACGAATTATCAACAATTTTATTTG GAAAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATATAATGTTAAAATATT TAACATATACTCGTCAAGGATTAGTAATGATTGCAGACCAACAAACCAAAGGTAGAGGAC GTGGTGTAAATAAATTCTTGTCTCCATTGGGATGTTTGTTAATGTCATTCAAATGTAAAC AAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAAG CAATTCACTCTTTCCCAAGTGCATCTGATTTAA----------AGAATTTAATTCATTCT GAAGTAATTAGTTCAACACAAGATATAATGTTAAAATATTTAACATATACTCGTCAAGGA TTAGTAATGATTGCAGACCAACAAACCAAAGGTAGAGGACGTGGTGTAAATAAATTCTTG TCTCCATTGGGATGTTTGTTAATGTCATTCAAATGTAAACAAACTGATGGTAATAAATTA CCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAAGCAATTCACTCTTTCCCAAGT GCATCTGATTTAAATCTTCGTTTGAAGTGGCCAAACGATATCTATAGTAATGAACCAGGT ATGAAAGTTGGTGGTGTCCTCTGTGAATCAAATTATCTTAACAATGAATTTGATGTTGTC ATTGGTGTTGGTGTTAATCTTTCAAATTCAAATAATCCATCAACAACTATAAATCAATTA ATTCAAAAGAAAAAATATGGATTTTCATCATCATCATTGGCAACAAGTACTGATATTCCA ATTTATATTAGTAGAGAAGAATTGGTTTCAAAATTCTTTAACAAATTCGAACCAATGTTT ATGGAATTTACAAGAGATGGCTTTAATGCAGATCTTGAAAATAGATACACTGACTTATGG ATGCATACAAATCAAATTGTAAAATTTAAAGAAAGAGATAACCATCATGTTAAAATCATT GGTATTTCTGATAGTGGTTTCCTTAAAGCTATTGAATGTGATGCTGATGGTAATACATCT TCTGACTCTGAAACCGTTGAGCTTCACCCAGATGGTACTTCATTNATATTCAAAACTTAA TTTTAAGCAAAAATCACAAC
Length of connected seq.	1450
Full length Seq ID	SFD294E
Full length Seq.	>SFD294E.Seq ATTAATAGTAATTATTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAAACAT ATACAATGATTGATTCAGATATAGAATTAAATAAAATAATAGTAGTACCATTAATATCAA AAGATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAATC AACCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTCTTTAATTAATCAAACTT CTGGTAATAATGATGAAGAAAGATTAGTTTTATTATTAAAACAACAACAACAAGAGGTAG AAAAAGATAAAACATTTGATACAAATAAATATTTTAACGAATTATCAACAATTTTATTTG GAAAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATATAATGTTAAAATATT TAACATATACTCGTCAAGGATTAGTAATGATTGCAGACCAACAAACCAAAGGTAGAGGAC GTGGTGTAAATAAATTCTTGTCTCCATTGGGATGTTTGTTAATGTCATTCAAATGTAAAC AAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAAG CAATTCACTCTTTCCCAAGTGCATCTGATTTAAATCTTCGTTTGAAGTGGCCAAACGATA TCTATAGTAATGAACCAGGTATGAAAGTTGGTGGTGTCCTCTGTGAATCAAATTATCTTA ACAATGAATTTGATGTTGTCATTGGTGTTGGTGTTAATCTTTCAAATTCAAATAATCCAT CAACAACTATAAATCAATTAATTCAAAAGAAAAAATATGGATTTTCATCATCATCATTGG CAACAAGTACTGATATTCCAATTTATATTAGTAGAGAAGAATTGGTTTCAAAATTCTTTA ACAAATTCGAACCAATGTTTATGGAATTTACAAGAGATGGCTTTAATGCAGATCTTGAAA ATAGATACACTGACTTATGGATGCATACAAATCAAATTGTAAAATTTAAAGAAAGAGATA ACCATCATGTTAAAATCATTGGTATTTCTGATAGTGGTTTCCTTAAAGCTATTGAATGTG ATGCTGATGGTAATACATCTTCTGACTCTGAAACCGTTGAGCTTCACCCAGATGGTACTT CATTNATATTCAAAACTTAATTTTAAGCAAAAATCACAAC
Length of full length seq.	1180

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas