SFD252
Library SF
(Link to library)
Clone ID SFD252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SFD252Z
(Link to Original site)
Representative DNA sequence
>SFD252 (SFD252Q) /CSM/SF/SFD2-C/SFD252Q.Seq.d/
XXXXXXXXXXTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGA
AAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTAT
TGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGA
TGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACT
TGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGA
AAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAAT
CGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAA
AATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATT
GGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGA
GAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACA
AATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGA
ACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAAACT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---PAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDE
NEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIV
EQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEK
QQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsfflkn


Translated Amino Acid sequence (All Frames)
Frame A:
---hll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*m
kmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnks
lnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkr
nnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliilsf*kt


Frame B:
---tcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*
k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr
*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssre
ttis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sfflfkk


Frame C:
---PAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDE
NEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIV
EQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEK
QQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsfflkn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/ 672 0.0
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/ 672 0.0
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/ 672 0.0
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/ 672 0.0
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/ 672 0.0
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/ 672 0.0
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/ 672 0.0
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/ 672 0.0
SHK242 (SHK242Q) /CSM/SH/SHK2-B/SHK242Q.Seq.d/ 672 0.0
SHJ786 (SHJ786Q) /CSM/SH/SHJ7-D/SHJ786Q.Seq.d/ 672 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 581 0.0 3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 1e-30 15
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 127 6e-27 5
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 2e-12 18
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 3e-11 20
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 6e-11 14
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 36 5e-10 25
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5. 34 9e-09 15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 2e-08 18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 6e-08 19
dna update 2003.12.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 235 1e-60
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 1.6
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143; 35 2.8
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 33 6.3
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I... 33 8.2
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 33 8.2
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote... 33 8.2

protein update 2009. 1. 7
PSORT

psg: 0.81 gvh: 0.16 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for SFD252 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFD252Z
3' end seq.
>SFD252Z.Seq
----------TCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGA
AAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTAT
TGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGA
TGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACT
TGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGA
AAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAAT
CGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAA
AATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATT
GGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGA
GAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACA
AATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGA
ACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAAACT
Length of 3' end seq. 694
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -